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May 12, 2022 10:58AM
Some of those dark spots seemed like common dropout.

For the to3d command, it looks like it suggests -ushort2float even if the option is being applied, which is confusing. The message admits to not knowing. I will take a look at why...

For comparison, try running dcm2niix (or dcm2niix_afni) and seeing what it produces. It will tend to reorient the data to RPI order but you can still compare with the Dimon/to3d output.

- rick
Subject Author Posted

dark spots on undistorted data Attachments

cecistein May 12, 2022 10:31AM

Re: dark spots on undistorted data

rick reynolds May 12, 2022 10:39AM

Re: dark spots on undistorted data Attachments

cecistein May 12, 2022 10:52AM

Re: dark spots on undistorted data

rick reynolds May 12, 2022 10:58AM

Re: dark spots on undistorted data

cecistein May 12, 2022 11:33AM

Re: dark spots on undistorted data

rick reynolds May 12, 2022 11:39AM

Re: dark spots on undistorted data Attachments

cecistein May 12, 2022 12:23PM

Re: dark spots on undistorted data

cecistein May 12, 2022 12:24PM



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