AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

May 25, 2022 03:19PM
Not sure what you mean by manual way, but there are options you can add to various alignment programs. The -tlrc_opts option controls some of these options. The options depend on what kinds of issues there are in the data. For example, skullstripping may be a problem there that can depend on the anatomy of the subject and the scan. Consider using @SSwarper for both skullstripping and alignment of the anatomical dataset to some templates. Then feed the results of that as input to
Subject Author Posted

Vol alignment (anat to template)

oflynnlena May 25, 2022 10:28AM

Re: Vol alignment (anat to template)

Daniel Glen May 25, 2022 03:19PM

Re: Vol alignment (anat to template)

ptaylor May 25, 2022 05:43PM