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May 25, 2022 05:43PM
Hi, Lena-

To add to Daniel's comment: would you be able to post your afni_proc.py command here? We might have some suggestions for that.

And also, as Daniel noted, for human data we lean on @SSwarper now pretty strongly for both skullstripping and nonlinear registration (in humans; for animal data, we would use @animal_warper---but I assume you are looking at human data at the moment). You would run that program before afni_proc.py, and then hand the results to afni_proc.py to use in processing. Is that what you are doing currently?

--pt
Subject Author Posted

Vol alignment (anat to template)

oflynnlena May 25, 2022 10:28AM

Re: Vol alignment (anat to template)

Daniel Glen May 25, 2022 03:19PM

Re: Vol alignment (anat to template)

ptaylor May 25, 2022 05:43PM



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