AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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ptaylor
May 25, 2022 05:43PM
Hi, Lena-

To add to Daniel's comment: would you be able to post your afni_proc.py command here? We might have some suggestions for that.

And also, as Daniel noted, for human data we lean on @SSwarper now pretty strongly for both skullstripping and nonlinear registration (in humans; for animal data, we would use @animal_warper---but I assume you are looking at human data at the moment). You would run that program before afni_proc.py, and then hand the results to afni_proc.py to use in processing. Is that what you are doing currently?

--pt
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Subject Author Posted

Vol alignment (anat to template)

oflynnlena May 25, 2022 10:28AM

Re: Vol alignment (anat to template)

Daniel Glen May 25, 2022 03:19PM

Re: Vol alignment (anat to template)

ptaylor May 25, 2022 05:43PM