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June 15, 2022 01:08PM
Hi all,
I am planning to use FATCAT and am preprocessing the data using fMRIPrep. The fMRIPrep by default uses the MNI152NLin2009cAsym template. Is this the same as the mni_icbm152_t1_tal_nlin_asym_09c.nii template that one can obtain online from the McDonnell BIC? I believe the 2009a version is the one that is modified in the fatcat_proc_mni_ref zip file, but I want to use the 2009c version to match with fMRIPrep.

If so, what steps do I need to do to convert it to something like mni_icbm152_t2_relx_tal_nlin_sym_09c_ACPCE.nii.gz? The two main differences seem to be that it is manually AC-PC aligned and regridded to have an even number of slices in all FOV planes. I guess the even numbers has to do with how AFNI finds the center of images? I'd like to have the wtell file, as well, but I don't how to do that either. Any suggestions would be useful.
Thanks,
Matt
Subject Author Posted

Using MNI152NLin2009cAsym template in FATCAT?

Matthew Hoptman June 15, 2022 01:08PM

Re: Using MNI152NLin2009cAsym template in FATCAT?

ptaylor June 15, 2022 02:38PM

Re: Using MNI152NLin2009cAsym template in FATCAT?

Matthew Hoptman June 15, 2022 02:51PM

Re: Using MNI152NLin2009cAsym template in FATCAT?

ptaylor June 15, 2022 03:44PM

Re: Using MNI152NLin2009cAsym template in FATCAT?

Matthew Hoptman June 15, 2022 03:27PM

Re: Using MNI152NLin2009cAsym template in FATCAT?

ptaylor June 15, 2022 03:45PM

Re: Using MNI152NLin2009cAsym template in FATCAT?

Matthew Hoptman June 15, 2022 03:27PM

Re: Using MNI152NLin2009cAsym template in FATCAT?

ptaylor June 15, 2022 03:48PM

Re: Using MNI152NLin2009cAsym template in FATCAT?

Matthew Hoptman June 15, 2022 04:30PM



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