afni.nimh.nih.gov

Hi Matt-

The script did work OK for me, that is odd...

This line:

dset_mask = `ls ${dset_t1:gas/.nii/_mask.nii/)`

is just taking the string stored in ${dset_t1}, and replacing ".nii" from it with "_mask.nii", and then searching for that new file name. You can just replace it with the actual dset name, I was aiming to generalize it, but certainly that could be hardwired to that actual file name in that subdir.

--pt