AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

|
June 29, 2022 03:54PM
Hi, Josh-

Indeed, the following crashed for me on Mac OS (which you are using):
+ Running "bash test_drive.sh", when "test_drive.sh" looks like:
#!/bin/sh

afni -com 'OPEN_WINDOW A.axialimage' \
FT_epi_r1+orig.HEAD
... run in the Bootcamp dataset: ~/AFNI_data6/FT_analysis/FT/. (Note that on Ubuntu, it worked fine).

However, this worked for me, with the addition of sourcing ~/.bashrc:
#!/bin/sh

source ~/.bashrc

afni -com 'OPEN_WINDOW A.axialimage' \
FT_epi_r1+orig.HEAD

... so I think it is an issue of how Mac shells source ~/.bash* files (or not, as the case may be) when a script is run.

--pt
Subject Author Posted

SIGSEV when trying to drive AFNI from command line

jbteves June 29, 2022 03:08PM

Re: SIGSEV when trying to drive AFNI from command line

ptaylor June 29, 2022 03:54PM

Re: SIGSEV when trying to drive AFNI from command line

ptaylor June 29, 2022 04:02PM

Re: SIGSEV when trying to drive AFNI from command line

jbteves June 29, 2022 04:16PM

Re: SIGSEV when trying to drive AFNI from command line

ptaylor June 29, 2022 04:53PM

Re: SIGSEV when trying to drive AFNI from command line

rick reynolds June 29, 2022 10:09PM

Re: SIGSEV when trying to drive AFNI from command line

jbteves June 29, 2022 10:32PM

Re: SIGSEV when trying to drive AFNI from command line

ptaylor June 29, 2022 10:42PM

Re: SIGSEV when trying to drive AFNI from command line

Daniel Glen June 30, 2022 04:50PM