AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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July 12, 2022 08:30AM
Hi, Maya-

Your system looks set up AFNI-wise, though that is over a year old---I would probably run:
@update.afni.binaries -d
to update it.

Your system appears to only have Python 2.7 on it, so it would only be able to run the old meica (Kundu et al.), at present. If you wanted to run the more modern meica (Du Pre et al.), you should definitely update your AFNI, as above; you would then need Python 3.*. You can use miniconda to add other environments to your computer, to "switch on/off" having Python 3.*, for example. Notes are here:
https://afni.nimh.nih.gov/pub/dist/doc/htmldoc/background_install/miniconda.html
(which even include instructions specifically for including the more modern meica/tedana).

I still think you should be getting the afni_proc.py-generated QC HTML---I will email you for some of the output log files to see what is happening in more detail.

--pt
Subject Author Posted

QC file for proc.py with tedana

MayaSa July 10, 2022 02:53AM

Re: QC file for proc.py with tedana

ptaylor July 10, 2022 06:53PM

Re: QC file for proc.py with tedana

MayaSa July 12, 2022 06:06AM

Re: QC file for proc.py with tedana

ptaylor July 12, 2022 08:30AM

Re: QC file for proc.py with tedana

ptaylor July 13, 2022 09:23AM