AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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July 28, 2022 07:01AM
Dear AFNI team (Gang!)

I hope you're all keeping safe and well.

I wanted to ask for your advice on modelling between-subjects effects in 3dLMEr.

I have a dataset where participants listen to a story twice. On the second listening, the story is either temporally scrambled at the sentence or word level.

I'd like to contrast the within-subject effects of the intact vs scrambled versions of the story. Further, I'd also like to contrast the between-subjects effects of listening to the sentence (long) vs word (short) scrambled versions of the story.

I've specified the model and post-hoc GLTs as follows, but I'm concerned that 3dLMEr may not account for differences in group variance between groups that listened to the short vs long scrambled versions of the story. Please could you advise as to whether my model specification here is sufficient?

-model 'Age+Gender+scram+(1|Subj)' \
-qVars "Age" \
-qVarsCenters 20.66 \
-gltCode intact 'scram : 1*intact' \
-gltCode longscram 'scram : 1*long' \
-gltCode shortscram 'scram : 1*short' \
-gltCode intactVscram 'scram : 1*intact -0.5*long -0.5*short' \
-gltCode intactVlong 'scram : 1*intact -1*long' \
-gltCode intactVshort 'scram : 1*intact -1*short' \
-gltCode longVshort 'scram : 1*long -1*short' \
-dataTable \
Subj Age Gender scram InputFile \
Subject Author Posted

3dLMEr between-subjects contrast clarification

gregetarian July 28, 2022 07:01AM

Re: 3dLMEr between-subjects contrast clarification

gang July 28, 2022 10:16AM

Re: 3dLMEr between-subjects contrast clarification

gregetarian July 28, 2022 04:06PM

Re: 3dLMEr between-subjects contrast clarification

gang July 29, 2022 09:15PM