AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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Daniel Glen
August 16, 2022 12:28PM
Regarding the swiss cheese part, that will be problematic possibly for the nonlinear alignment. You might start with just an affine alignment to a template to start, where I would expect the "holiness" of the cerebellum not to have a big enough influence on the optimum, single affine matrix transformation for the whole volume. Another approach is to limit the nonlinear alignment to just the initial stages with -maxlev. Alternatively mask the cerebellum off before the alignment or make it an exclusion mask in the nonlinear warping step.
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Template registration in murine models of disease Attachments

irosstopher August 16, 2022 04:17AM

Re: Template registration in murine models of disease

Daniel Glen August 16, 2022 12:28PM