AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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Fizza
August 19, 2022 04:28PM
3dresample -master warsub-01_rest-MCI.nii -prefix MASK_resampl
ed -input MASK+tlrc
*+ WARNING: If you are performing spatial transformations on an oblique dset,
such as ./MASK+tlrc.BRIK,
or viewing/combining it with volumes of differing obliquity,
you should consider running:
3dWarp -deoblique
on this and other oblique datasets in the same session.
See 3dWarp -help for details.
++ Oblique dataset:./MASK+tlrc.BRIK is 16.472595 degrees from plumb.

Hello,

I got this warning after 3dresample command to extract ROIs. Kindly help me with how to get time-series for these types of dataset.

Regards,
Fizza
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Subject Author Posted

How to fix oblique dataset issue

Fizza August 19, 2022 04:28PM

Re: How to fix oblique dataset issue

Daniel Glen August 20, 2022 02:47PM