AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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jbteves
August 31, 2022 10:17AM
When running abids_tool.py, an error is triggered on biowulf but not locally:
++ WARNING: nifti_read_buffer(/gpfs/gsfs12/users/tevesjb/Frontiers_QC_2022/osfstorage-archive/fmri-open-qc-task/sub-001/func/sub-001_task-pamenc_bold.nii.gz):
data bytes needed = 278528
data bytes input = 216336
number missing = 62192 (set to 0)
** NIFTI load bricks: cannot read brick 19 from '/gpfs/gsfs12/users/tevesjb/Frontiers_QC_2022/osfstorage-archive/fmri-open-qc-task/sub-001/func/sub-001_task-pamenc_bold.nii.gz'
** NIFTI load bricks: cannot read brick 19 from '/gpfs/gsfs12/users/tevesjb/Frontiers_QC_2022/osfstorage-archive/fmri-open-qc-task/sub-001/func/sub-001_task-pamenc_bold.nii.gz'
** ERROR: Can't write NIfTI file since dataset isn't loaded: /gpfs/gsfs12/users/tevesjb/Frontiers_QC_2022/osfstorage-archive/fmri-open-qc-task/sub-001/func/sub-001_task-pamenc_bold.nii.gz

Whereas locally, no such errors are present using a MacOS build and the exact same file (confirmed by copying and sftping). Any thoughts on how to diagnose this?
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Subject Author Posted

Error reading brick on biowulf but not locally

jbteves August 31, 2022 10:17AM

Re: Error reading brick on biowulf but not locally

jbteves September 01, 2022 06:36AM

Re: Error reading brick on biowulf but not locally

ptaylor September 01, 2022 07:10AM

Re: Error reading brick on biowulf but not locally

jbteves September 01, 2022 07:25AM

Re: Error reading brick on biowulf but not locally

ptaylor September 01, 2022 09:11AM

Re: Error reading brick on biowulf but not locally

jbteves September 01, 2022 10:38AM

Re: Error reading brick on biowulf but not locally

ptaylor September 01, 2022 10:45AM

Re: Error reading brick on biowulf but not locally

jbteves September 01, 2022 10:47AM

Re: Error reading brick on biowulf but not locally

ptaylor September 01, 2022 10:48AM

Re: Error reading brick on biowulf but not locally

jbteves September 01, 2022 10:50AM