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History of AFNI updates  

|
November 04, 2022 12:51PM
Hello again!

Thank you for all your help with my newbie questions.

I am getting an error running @ClustExp_CatLab.
I will put the full output below. It seems that the error occurs at 3dcalc (Argument list too long).

I'm pretty sure my csv file is correctly formatted (no headers, different subbrik per line), I copy and paste example rows at the end.

Thanks so much,
Maria

[mironside@compute203 work]$ @ClustExp_CatLab -input FC_paths.csv -prefix all_FC_data.nii.gz
-- will fix any bad char check errors in delete.me00.2D
FC_paths.csv has 0 bad characters

** non-Unix check output file 'delete.me00.2D' exists, will overwrite
-- will fix any non-Unix check errors in delete.me00.2D
delete.me00.2D file type: DOS
/opt/apps/core/afni/22.0.11/3dcalc: Argument list too long.
++ 3drefit: AFNI version=AFNI_22.0.13 (Mar  1 2022) [64-bit]
++ Authored by: RW Cox
++ -relabel_all* AA438 AA438 AA438 AA438 AA438 AA438 AA438 AB903 AB903 AB903 AB903 AB903 AB903 AB903 AC609 AC609 AC609 AC609 AC609 AC609 AC609 AD497 AD497 AD497 AD497 AD497 AD497 AD497 AE646 AE646 AE646 AE646 AE646 AE646 AE646 AF374 AF374 AF374 AF374 AF374 AF374 AF374 AF486 AF486 AF486 AF486 AF486 AF486 AF486 AG599 AG599 AG599 AG599 AG599 AG599 AG599 AH145 AH145 AH145 AH145 AH145 AH145 AH145 AH224 AH224 AH224 AH224 AH224 AH224 AH224 AH245 AH245 AH245 AH245 AH245 AH245 AH245 AH373 AH373 AH373 AH373 AH373 AH373 AH373 AH430 AH430 AH430 AH430 AH430 AH430 AH430 AH553 AH553 AH553 AH553 AH553 AH553 AH553 AH994 AH994 AH994 AH994 AH994 AH994 AH994 AI107 AI107 AI107 AI107 AI107 AI107 AI107 AI266 AI266 AI266 AI266 AI266 AI266 AI266 AI304 AI304 AI304 AI304 AI304 AI304 AI304 AI374 AI374 AI374 AI374 AI374 AI374 AI374 AI432 AI432 AI432 AI432 AI432 AI432 AI432 AI637 AI637 AI637 AI637 AI637 AI637 AI637 AI898 AI898 AI898 AI898 AI898 AI898 AI898 AI926 AI926 AI926 AI926 AI926 AI926 AI926 AI932 AI932 AI932 AI932 AI932 AI932 AI932 AJ023 AJ023 AJ023 AJ023 AJ023 AJ023 AJ023 AJ031 AJ031 AJ031 AJ031 AJ031 AJ031 AJ031 AJ108 AJ108 AJ108 AJ108 AJ108 AJ108 AJ108 AJ190 AJ190 AJ190 AJ190 AJ190 AJ190 AJ190 AJ194 AJ194 AJ194 AJ194 AJ194 AJ194 AJ194 AJ196 AJ196 AJ196 AJ196 AJ196 AJ196 AJ196 AJ257 AJ257 AJ257 AJ257 AJ257 AJ257 AJ257 AJ278 AJ278 AJ278 AJ278 AJ278 AJ278 AJ278 AJ294 AJ294 AJ294 AJ294 AJ294 AJ294 AJ294 AJ296 AJ296 AJ296 AJ296 AJ296 AJ296 AJ296 AJ301 AJ301 AJ301 AJ301 AJ301 AJ301 AJ301 AJ371 AJ371 AJ371 AJ371 AJ371 AJ371 AJ371 AJ409 AJ409 AJ409 AJ409 AJ409 AJ409 AJ409 AJ421 AJ421 AJ421 AJ421 AJ421 AJ421 AJ421 AJ537 AJ537 AJ537 AJ537 AJ537 AJ537 AJ537 AJ577 AJ577 AJ577 AJ577 AJ577 AJ577 AJ577 AJ597 AJ597 AJ597 AJ597 AJ597 AJ597 AJ597 AJ644 AJ644 AJ644 AJ644 AJ644 AJ644 AJ644 AJ661 AJ661 AJ661 AJ661 AJ661 AJ661 AJ661 AJ680 AJ680 AJ680 AJ680 AJ680 AJ680 AJ680 AJ684 AJ684 AJ684 AJ684 AJ684 AJ684 AJ684 AJ702 AJ702 AJ702 AJ702 AJ702 AJ702 AJ702 AJ718 AJ718 AJ718 AJ718 AJ718 AJ718 AJ718 AJ773 AJ773 AJ773 AJ773 AJ773 AJ773 AJ773 AJ775 AJ775 AJ775 AJ775 AJ775 AJ775 AJ775 AJ793 AJ793 AJ793 AJ793 AJ793 AJ793 AJ793 AJ815 AJ815 AJ815 AJ815 AJ815 AJ815 AJ815 AJ829 AJ829 AJ829 AJ829 AJ829 AJ829 AJ829 AJ854 AJ854 AJ854 AJ854 AJ854 AJ854 AJ854 AJ855 AJ855 AJ855 AJ855 AJ855 AJ855 AJ855 AJ975 AJ975 AJ975 AJ975 AJ975 AJ975 AJ975 AK028 AK028 AK028 AK028 AK028 AK028 AK028 AK084 AK084 AK084 AK084 AK084 AK084 AK084 AK102 AK102 AK102 AK102 AK102 AK102 AK102 AK106 AK106 AK106 AK106 AK106 AK106 AK106 AK127 AK127 AK127 AK127 AK127 AK127 AK127 AK148 AK148 AK148 AK148 AK148 AK148 AK148 AK178 AK178 AK178 AK178 AK178 AK178 AK178 AK245 AK245 AK245 AK245 AK245 AK245 AK245 AK252 AK252 AK252 AK252 AK252 AK252 AK252 AK267 AK267 AK267 AK267 AK267 AK267 AK267 AK288 AK288 AK288 AK288 AK288 AK288 AK288 AK303 AK303 AK303 AK303 AK303 AK303 AK303 AK372 AK372 AK372 AK372 AK372 AK372 AK372 AK465 AK465 AK465 AK465 AK465 AK465 AK465 AK512 AK512 AK512 AK512 AK512 AK512 AK512 AK528 AK528 AK528 AK528 AK528 AK528 AK528 AK541 AK541 AK541 AK541 AK541 AK541 AK541 AK551 AK551 AK551 AK551 AK551 AK551 AK551 AK568 AK568 AK568 AK568 AK568 AK568 AK568 AK570 AK570 AK570 AK570 AK570 AK570 AK570 AK612 AK612 AK612 AK612 AK612 AK612 AK612 AK635 AK635 AK635 AK635 AK635 AK635 AK635 AK662 AK662 AK662 AK662 AK662 AK662 AK662 AK775 AK775 AK775 AK775 AK775 AK775 AK775 AK812 AK812 AK812 AK812 AK812 AK812 AK812 AK868 AK868 AK868 AK868 AK868 AK868 AK868 AK906 AK906 AK906 AK906 AK906 AK906 AK906 AK921 AK921 AK921 AK921 AK921 AK921 AK921 AK923 AK923 AK923 AK923 AK923 AK923 AK923 AK943 AK943 AK943 AK943 AK943 AK943 AK943 AL108 AL108 AL108 AL108 AL108 AL108 AL108 AL134 AL134 AL134 AL134 AL134 AL134 AL134 AL206 AL206 AL206 AL206 AL206 AL206 AL206 AL233 AL233 AL233 AL233 AL233 AL233 AL233 AL241 AL241 AL241 AL241 AL241 AL241 AL241 AL307 AL307 AL307 AL307 AL307 AL307 AL307 AL383 AL383 AL383 AL383 AL383 AL383 AL383 AL396 AL396 AL396 AL396 AL396 AL396 AL396 AL454 AL454 AL454 AL454 AL454 AL454 AL454 AL507 AL507 AL507 AL507 AL507 AL507 AL507 AL511 AL511 AL511 AL511 AL511 AL511 AL511 AL522 AL522 AL522 AL522 AL522 AL522 AL522 AL596 AL596 AL596 AL596 AL596 AL596 AL596 AL611 AL611 AL611 AL611 AL611 AL611 AL611 AL627 AL627 AL627 AL627 AL627 AL627 AL627 AL650 AL650 AL650 AL650 AL650 AL650 AL650 AL695 AL695 AL695 AL695 AL695 AL695 AL695 AL747 AL747 AL747 AL747 AL747 AL747 AL747 AL808 AL808 AL808 AL808 AL808 AL808 AL808 AM107 AM107 AM107 AM107 AM107 AM107 AM107 AM177 AM177 AM177 AM177 AM177 AM177 AM177 AM244 AM244 AM244 AM244 AM244 AM244 AM244 AM467 AM467 AM467 AM467 AM467 AM467 AM467 AM560 AM560 AM560 AM560 AM560 AM560 AM560 AM777 AM777 AM777 AM777 AM777 AM777 AM777 AM827 AM827 AM827 AM827 AM827 AM827 AM827 AM956 AM956 AM956 AM956 AM956 AM956 AM956 AM971 AM971 AM971 AM971 AM971 AM971 AM971 AM981 AM981 AM981 AM981 AM981 AM981 AM981 AN012 AN012 AN012 AN012 AN012 AN012 AN012 AN119 AN119 AN119 AN119 AN119 AN119 AN119 AN178 AN178 AN178 AN178 AN178 AN178 AN178 AN332 AN332 AN332 AN332 AN332 AN332 AN332 AN414 AN414 AN414 AN414 AN414 AN414 AN414 AN424 AN424 AN424 AN424 AN424 AN424 AN424 AN488 AN488 AN488 AN488 AN488 AN488 AN488 AN523 AN523 AN523 AN523 AN523 AN523 AN523 AN565 AN565 AN565 AN565 AN565 AN565 AN565 AN624 AN624 AN624 AN624 AN624 AN624 AN624 AN655 AN655 AN655 AN655 AN655 AN655 AN655 AN684 AN684 AN684 AN684 AN684 AN684 AN684 AN862 AN862 AN862 AN862 AN862 AN862 AN862 AN874 AN874 AN874 AN874 AN874 AN874 AN874 AN940 AN940 AN940 AN940 AN940 AN940 AN940 AN960 AN960 AN960 AN960 AN960 AN960 AN960 AN965 AN965 AN965 AN965 AN965 AN965 AN965 AN976 AN976 AN976 AN976 AN976 AN976 AN976 AN979 AN979 AN979 AN979 AN979 AN979 AN979 AO035 AO035 AO035 AO035 AO035 AO035 AO035 AO063 AO063 AO063 AO063 AO063 AO063 AO063 AO065 AO065 AO065 AO065 AO065 AO065 AO065 AO238 AO238 AO238 AO238 AO238 AO238 AO238 AO248 AO248 AO248 AO248 AO248 AO248 AO248 AO427 AO427 AO427 AO427 AO427 AO427 AO427 AO440 AO440 AO440 AO440 AO440 AO440 AO440 AO480 AO480 AO480 AO480 AO480 AO480 AO480 AO494 AO494 AO494 AO494 AO494 AO494 AO494 AO525 AO525 AO525 AO525 AO525 AO525 AO525 AO565 AO565 AO565 AO565 AO565 AO565 AO565 AO580 AO580 AO580 AO580 AO580 AO580 AO580 AO615 AO615 AO615 AO615 AO615 AO615 AO615 AO679 AO679 AO679 AO679 AO679 AO679 AO679 AP019 AP019 AP019 AP019 AP019 AP019 AP019 AP203 AP203 AP203 AP203 AP203 AP203 AP203 AP241 AP241 AP241 AP241 AP241 AP241 AP241 AP385 AP385 AP385 AP385 AP385 AP385 AP385 AP402 AP402 AP402 AP402 AP402 AP402 AP402 AP471 AP471 AP471 AP471 AP471 AP471 AP471 AP607 AP607 AP607 AP607 AP607 AP607 AP607 AP663 AP663 AP663 AP663 AP663 AP663 AP663 AP670 AP670 AP670 AP670 AP670 AP670 AP670 AP676 AP676 AP676 AP676 AP676 AP676 AP676 AP733 AP733 AP733 AP733 AP733 AP733 AP733 AP861 AP861 AP861 AP861 AP861 AP861 AP861 AP883 AP883 AP883 AP883 AP883 AP883 AP883 AP900 AP900 AP900 AP900 AP900 AP900 AP900 AP933 AP933 AP933 AP933 AP933 AP933 AP933 AQ521 AQ521 AQ521 AQ521 AQ521 AQ521 AQ521 AQ589 AQ589 AQ589 AQ589 AQ589 AQ589 AQ589 AQ824 AQ824 AQ824 AQ824 AQ824 AQ824 AQ824 AQ947 AQ947 AQ947 AQ947 AQ947 AQ947 AQ947 AQ978 AQ978 AQ978 AQ978 AQ978 AQ978 AQ978 AQ987 AQ987 AQ987 AQ987 AQ987 AQ987 AQ987 AR116 AR116 AR116 AR116 AR116 AR116 AR116 AR118 AR118 AR118 AR118 AR118 AR118 AR118 AR250 AR250 AR250 AR250 AR250 AR250 AR250 AR263 AR263 AR263 AR263 AR263 AR263 AR263 AR345 AR345 AR345 AR345 AR345 AR345 AR345 AR402 AR402 AR402 AR402 AR402 AR402 AR402 AR574 AR574 AR574 AR574 AR574 AR574 AR574 AR676 AR676 AR676 AR676 AR676 AR676 AR676 AR803 AR803 AR803 AR803 AR803 AR803 AR803 AS038 AS038 AS038 AS038 AS038 AS038 AS038 AS229 AS229 AS229 AS229 AS229 AS229 AS229 AS239 AS239 AS239 AS239 AS239 AS239 AS239 AS240 AS240 AS240 AS240 AS240 AS240 AS240 AS331 AS331 AS331 AS331 AS331 AS331 AS331 AS446 AS446 AS446 AS446 AS446 AS446 AS446 AS588 AS588 AS588 AS588 AS588 AS588 AS588 AS726 AS726 AS726 AS726 AS726 AS726 AS726 AS768 AS768 AS768 AS768 AS768 AS768 AS768 AS896 AS896 AS896 AS896 AS896 AS896 AS896 AS935 AS935 AS935 AS935 AS935 AS935 AS935 AS974 AS974 AS974 AS974 AS974 AS974 AS974 AT030 AT030 AT030 AT030 AT030 AT030 AT030 AT253 AT253 AT253 AT253 AT253 AT253 AT253 AT291 AT291 AT291 AT291 AT291 AT291 AT291 AT296 AT296 AT296 AT296 AT296 AT296 AT296 AT547 AT547 AT547 AT547 AT547 AT547 AT547 AT573 AT573 AT573 AT573 AT573 AT573 AT573 contains 1365 labels
** ERROR: Can't open dataset delete.me00.nii.gz
++ 3drefit processed 0 datasets
++ 3dcopy: AFNI version=AFNI_22.0.13 (Mar  1 2022) [64-bit]
** failed to open input 'delete.me00.nii.gz' on non-AFNI write
Try including the view of the input dataset delete.me00.nii.gz
or use its fullname. That might take care of the error.
rm: cannot remove ‘delete.me00.nii.gz’: No such file or directory

here is the first few rows of the csv:

AA438 /media/cephfs/labs/NPC/Analysis/rkuplicki/processing-T1000/results-__FC-fine/AA438/T0/__FC/stats.AA438-T0-__FC.scaled+tlrc[PlusvMinusR1_GLT#0_Coef]
AA438 /media/cephfs/labs/NPC/Analysis/rkuplicki/processing-T1000/results-__FC-fine/AA438/T0/__FC/stats.AA438-T0-__FC.scaled+tlrc[PlusvMinusEarlyR2_GLT#0_Coef]
AA438 /media/cephfs/labs/NPC/Analysis/rkuplicki/processing-T1000/results-__FC-fine/AA438/T0/__FC/stats.AA438-T0-__FC.scaled+tlrc[PlusvMinusLateR2_GLT#0_Coef]
AA438 /media/cephfs/labs/NPC/Analysis/rkuplicki/processing-T1000/results-__FC-fine/AA438/T0/__FC/stats.AA438-T0-__FC.scaled+tlrc[PlusvMinusEarlyR3_GLT#0_Coef]
AA438 /media/cephfs/labs/NPC/Analysis/rkuplicki/processing-T1000/results-__FC-fine/AA438/T0/__FC/stats.AA438-T0-__FC.scaled+tlrc[PlusvMinusLateR3_GLT#0_Coef]
AA438 /media/cephfs/labs/NPC/Analysis/rkuplicki/processing-T1000/results-__FC-fine/AA438/T0/__FC/stats.AA438-T0-__FC.scaled+tlrc[PlusvMinusEarlyR4_GLT#0_Coef]
AA438 /media/cephfs/labs/NPC/Analysis/rkuplicki/processing-T1000/results-__FC-fine/AA438/T0/__FC/stats.AA438-T0-__FC.scaled+tlrc[PlusvMinusLateR4_GLT#0_Coef]
AB903 /media/cephfs/labs/NPC/Analysis/rkuplicki/processing-T1000/results-__FC-fine/AB903/T0/__FC/stats.AB903-T0-__FC.scaled+tlrc[PlusvMinusR1_GLT#0_Coef]
AB903 /media/cephfs/labs/NPC/Analysis/rkuplicki/processing-T1000/results-__FC-fine/AB903/T0/__FC/stats.AB903-T0-__FC.scaled+tlrc[PlusvMinusEarlyR2_GLT#0_Coef]
AB903 /media/cephfs/labs/NPC/Analysis/rkuplicki/processing-T1000/results-__FC-fine/AB903/T0/__FC/stats.AB903-T0-__FC.scaled+tlrc[PlusvMinusLateR2_GLT#0_Coef]
AB903 /media/cephfs/labs/NPC/Analysis/rkuplicki/processing-T1000/results-__FC-fine/AB903/T0/__FC/stats.AB903-T0-__FC.scaled+tlrc[PlusvMinusEarlyR3_GLT#0_Coef]
AB903 /media/cephfs/labs/NPC/Analysis/rkuplicki/processing-T1000/results-__FC-fine/AB903/T0/__FC/stats.AB903-T0-__FC.scaled+tlrc[PlusvMinusLateR3_GLT#0_Coef]
AB903 /media/cephfs/labs/NPC/Analysis/rkuplicki/processing-T1000/results-__FC-fine/AB903/T0/__FC/stats.AB903-T0-__FC.scaled+tlrc[PlusvMinusEarlyR4_GLT#0_Coef]
AB903 /media/cephfs/labs/NPC/Analysis/rkuplicki/processing-T1000/results-__FC-fine/AB903/T0/__FC/stats.AB903-T0-__FC.scaled+tlrc[PlusvMinusLateR4_GLT#0_Coef]
AC609 /media/cephfs/labs/NPC/Analysis/rkuplicki/processing-T1000/results-__FC-fine/AC609/T0/__FC/stats.AC609-T0-__FC.scaled+tlrc[PlusvMinusR1_GLT#0_Coef]
AC609 /media/cephfs/labs/NPC/Analysis/rkuplicki/processing-T1000/results-__FC-fine/AC609/T0/__FC/stats.AC609-T0-__FC.scaled+tlrc[PlusvMinusEarlyR2_GLT#0_Coef]
AC609 /media/cephfs/labs/NPC/Analysis/rkuplicki/processing-T1000/results-__FC-fine/AC609/T0/__FC/stats.AC609-T0-__FC.scaled+tlrc[PlusvMinusLateR2_GLT#0_Coef]
AC609 /media/cephfs/labs/NPC/Analysis/rkuplicki/processing-T1000/results-__FC-fine/AC609/T0/__FC/stats.AC609-T0-__FC.scaled+tlrc[PlusvMinusEarlyR3_GLT#0_Coef]
AC609 /media/cephfs/labs/NPC/Analysis/rkuplicki/processing-T1000/results-__FC-fine/AC609/T0/__FC/stats.AC609-T0-__FC.scaled+tlrc[PlusvMinusLateR3_GLT#0_Coef]
AC609 /media/cephfs/labs/NPC/Analysis/rkuplicki/processing-T1000/results-__FC-fine/AC609/T0/__FC/stats.AC609-T0-__FC.scaled+tlrc[PlusvMinusEarlyR4_GLT#0_Coef]
AC609 /media/cephfs/labs/NPC/Analysis/rkuplicki/processing-T1000/results-__FC-fine/AC609/T0/__FC/stats.AC609-T0-__FC.scaled+tlrc[PlusvMinusLateR4_GLT#0_Coef]
AD497 /media/cephfs/labs/NPC/Analysis/rkuplicki/processing-T1000/results-__FC-fine/AD497/T0/__FC/stats.AD497-T0-__FC.scaled+tlrc[PlusvMinusR1_GLT#0_Coef]
AD497 /media/cephfs/labs/NPC/Analysis/rkuplicki/processing-T1000/results-__FC-fine/AD497/T0/__FC/stats.AD497-T0-__FC.scaled+tlrc[PlusvMinusEarlyR2_GLT#0_Coef]
AD497 /media/cephfs/labs/NPC/Analysis/rkuplicki/processing-T1000/results-__FC-fine/AD497/T0/__FC/stats.AD497-T0-__FC.scaled+tlrc[PlusvMinusLateR2_GLT#0_Coef]
AD497 /media/cephfs/labs/NPC/Analysis/rkuplicki/processing-T1000/results-__FC-fine/AD497/T0/__FC/stats.AD497-T0-__FC.scaled+tlrc[PlusvMinusEarlyR3_GLT#0_Coef]
AD497 /media/cephfs/labs/NPC/Analysis/rkuplicki/processing-T1000/results-__FC-fine/AD497/T0/__FC/stats.AD497-T0-__FC.scaled+tlrc[PlusvMinusLateR3_GLT#0_Coef]
AD497 /media/cephfs/labs/NPC/Analysis/rkuplicki/processing-T1000/results-__FC-fine/AD497/T0/__FC/stats.AD497-T0-__FC.scaled+tlrc[PlusvMinusEarlyR4_GLT#0_Coef]
AD497 /media/cephfs/labs/NPC/Analysis/rkuplicki/processing-T1000/results-__FC-fine/AD497/T0/__FC/stats.AD497-T0-__FC.scaled+tlrc[PlusvMinusLateR4_GLT#0_Coef]
Subject Author Posted

@ClustExp_CatLab

mironside November 04, 2022 12:51PM

Re: @ClustExp_CatLab

discoraj November 07, 2022 07:45AM

Re: @ClustExp_CatLab

discoraj November 11, 2022 11:04AM