AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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ptaylor
November 11, 2022 03:01PM
Hi-

I believe the count of TRs per stim is from the convolved time series, which do appear to overlap a fair amount.

Note that the afni_proc.py QC (APQC) HTML does calculate the number of censored time points per stim, even providing some warning levels. Have you looked at that? There should be a QC_${subj} directory in your AP results output, and you can open the index.html file there. There will be stats maps, alignment checks and much, much more.

Here is an older set of pages about it:
https://afni.nimh.nih.gov/pub/dist/doc/htmldoc/tutorials/apqc_html/main_toc.html

--pt



Edited 1 time(s). Last edit at 11/11/2022 03:02PM by ptaylor.
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Number of censored TRs Attachments

giono November 11, 2022 11:48AM

Re: Number of censored TRs

ptaylor November 11, 2022 03:01PM

Re: Number of censored TRs

rick reynolds November 11, 2022 04:09PM