I'm reviewing the QC for one of our participants and the alignment is not very good at all. I'm not sure why, so I was hoping you could give me some ideas about what might be happening here.
Our old piecemeal pipeline (did not have an alignment step, just VR and TLRC) yielded much better correspondence between the anatomical and output of 3dDeconvolve. The first attachment shows the va2t part of QT. The second attachment shows the stats output dataset with threshold set to 1.0 to show the poor alignment.
Attachments:
open |
download -
Screen Shot 2022-11-21 at 2.43.04 PM.png
(1.3 MB)
open |
download -
afniproc_stats_pooralignment.png
(578.6 KB)