AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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November 22, 2022 06:31AM
OK, thanks for sharing that.

Some of the errors in the "please fix" can be ignored at the moment (e.g., the stats program ones, because on a Mac at the moment users are required to use R v3.6.*).

Installing matplotlib would greatly improve the APQC HTML, because all the line plots will look a lot nicer (and a few other things get calculated).

From these two messages:
* consider installing gcc under homebrew
* consider installing glib under homebrew
I wonder if this Xcode/Xquartz installation was successful:
... [afni.nimh.nih.gov]

If you are getting volumetric images like the ones shown in the APQC HTML, then @chauffeur_afni is able to run OK on your computer, because that is what makes those. There is no error message, so it is not clear why it wouldn't create an image for what you ran. I wonder if the netpbm installation (needed to make PNG specifically on a MAC, and the APQC HTML uses JPGs) might not have completed properly? That might also depend on the gcc and glib above. After getting those installed, can you try this step again to make sure it completes successfully:
https://afni.nimh.nih.gov/pub/dist/doc/htmldoc/background_install/install_instructs/steps_mac.html#install-netpbm

--pt
Subject Author Posted

Possible to start afniproc.py routine at regress step?

mamlung-KU November 16, 2022 03:18PM

Re: Possible to start afniproc.py routine at regress step?

rick reynolds November 16, 2022 06:28PM

Re: Possible to start afniproc.py routine at regress step?

ptaylor November 16, 2022 10:08PM

Re: Possible to start afniproc.py routine at regress step?

mamlung-KU November 17, 2022 04:54PM

Re: Possible to start afniproc.py routine at regress step?

ptaylor November 17, 2022 06:26PM

Re: Possible to start afniproc.py routine at regress step?

mamlung-KU November 21, 2022 12:13PM

Re: Possible to start afniproc.py routine at regress step? Attachments

mamlung-KU November 21, 2022 03:47PM

Re: Possible to start afniproc.py routine at regress step?

rick reynolds November 21, 2022 05:18PM

Re: Possible to start afniproc.py routine at regress step? Attachments

mamlung-KU November 21, 2022 08:20PM

Re: Possible to start afniproc.py routine at regress step? Attachments

mamlung-KU November 21, 2022 11:28PM

Re: Possible to start afniproc.py routine at regress step?

ptaylor November 27, 2022 08:37AM

Re: Possible to start afniproc.py routine at regress step?

ptaylor November 21, 2022 06:31PM

Re: Possible to start afniproc.py routine at regress step?

mamlung-KU November 21, 2022 08:13PM

Re: Possible to start afniproc.py routine at regress step?

ptaylor November 22, 2022 06:31AM

Re: Possible to start afniproc.py routine at regress step?

rick reynolds November 17, 2022 08:33PM