AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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January 15, 2023 06:21PM
Hi-

I would agree that a single coordinate is often not enough for really summarizing a cluster accurately. We make the case here:
https://www.biorxiv.org/content/10.1101/2022.10.26.513929v2
... that the whereami functionality of looking for overlaps with an ROI atlas is a much more informative way to go. See in particular the discussion starting on page 17 of that draft ("One additional aspect is worth noting..."), comparing the relative information content of Tables 1 and 2.

For example, to get the list of ROIs that overlap with each region in the Clust_mask+tlrc dataset in the Glasser MNI atlas, you could use:
whereami                                          \
            -omask Clust_mask+tlrc.HEAD                \
            -atlas MNI_Glasser_HCP_v1.0
You could also do that ROI-by-ROI, e.g., for the ROI with integer value 4 in your cluster mask:
whereami                                          \
            -omask Clust_mask+tlrc.HEAD"<4>"                \
            -atlas MNI_Glasser_HCP_v1.0

--pt
Subject Author Posted

Multiple coordinates per cluster for cluster report

Catherine Tallman January 15, 2023 03:38PM

Re: Multiple coordinates per cluster for cluster report

ptaylor January 15, 2023 06:21PM

Re: Multiple coordinates per cluster for cluster report

Catherine Tallman January 19, 2023 12:44PM

Re: Multiple coordinates per cluster for cluster report

ptaylor January 19, 2023 04:05PM

Re: Multiple coordinates per cluster for cluster report

Christine Smith January 20, 2023 07:26PM

Re: Multiple coordinates per cluster for cluster report

ptaylor January 21, 2023 07:28AM

Re: Multiple coordinates per cluster for cluster report

Catherine Tallman January 23, 2023 01:46PM