AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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ebaldelo
January 17, 2023 10:52AM
Hello, I got the below error using the below code for 3dvolreg. This code was just working last week. So not sure what has happened/changed since. I even re-tried it on a data set that I used it with previously and got the same message. I use the code in a '.sh' file in case it's worth knowing but copying/using the code directly doesn't seem to change anything.

Thank you in advance for your help.

Cheers,
Edwin 

3dvolreg \
-overwrite \
-prefix $AnimalID/$FolderID/${AnimalID}_${FolderID}.BoxReg \
-base $AnimalID/$FolderID/${AnimalID}_${FolderID}.Box.Mean+orig[0] \
-weight $AnimalID/$FolderID/COPY_tempab2+orig[0] \
-heptic \
-dfile $AnimalID/$FolderID/dfile_VolReg \
$AnimalID/$FolderID/${AnimalID}_${FolderID}.Box+orig


++ 3dvolreg: AFNI version=AFNI_23.0.00 (Jan  6 2023) [64-bit]
++ Authored by: RW Cox

Fatal Signal 11 (SIGSEGV) received
    mri_startup_lsqfit
   mri_3dalign_setup
  3dvolreg main
 Bottom of Debug Stack
** AFNI version = AFNI_23.0.00  Compile date = Jan  6 2023
** [[Precompiled binary macos_10.12_local: Jan  6 2023]]
** Program Death **
** If you report this crash to the AFNI message board,
** please copy the error messages EXACTLY, and give
** the command line you used to run the program, and
** any other information needed to repeat the problem.
** You may later be asked to upload data to help debug.
** Crash log is appended to file /Users/ebaldelo/.afni.crashlog



Edited 1 time(s). Last edit at 01/17/2023 10:55AM by ebaldelo.
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Subject Author Posted

3dvolreg Fatal Signal 11 (SIGSEGV) received

ebaldelo January 17, 2023 10:52AM

Re: 3dvolreg Fatal Signal 11 (SIGSEGV) received

ebaldelo January 17, 2023 12:51PM

Re: 3dvolreg Fatal Signal 11 (SIGSEGV) received

ptaylor January 17, 2023 01:16PM