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Dear AFNI users-

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Sincerely, AFNI HQ

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smoia
May 10, 2023 11:55AM
Dear Gang & AFNI team,

I was trygint o run 3dICC today, when the program stopped (immediately) with the following error: 
Error in is.null(ss) || !length(ss) || ss == "" :
  'length = 284' in coercion to 'logical(1)'
Calls: read.ICC.opts.batch -> parse.AFNI.args -> is.num.string
Execution halted

The full call was: 
3dICC -prefix ICC/breathhold_optcom_cvr_1.nii.gz -jobs 10 -mask MNI/MNI_GM_mask.nii.gz -model  '1+(1|session)+(1|Subj)' -tStat 'tFile' -dataTable      Subj session    tFile                           InputFile                  001  01  norm/001_01_breathhold_optcom_ntrial-1_tstat.nii.gz  norm/001_01_breathhold_optcom_ntrial-1_cvr.nii.gz      001  02  norm/001_02_breathhold_optcom_ntrial-1_tstat.nii.gz  norm/001_02_breathhold_optcom_ntrial-1_cvr.nii.gz      001  03  norm/001_03_breathhold_optcom_ntrial-1_tstat.nii.gz  norm/001_03_breathhold_optcom_ntrial-1_cvr.nii.gz      001  04  norm/001_04_breathhold_optcom_ntrial-1_tstat.nii.gz  norm/001_04_breathhold_optcom_ntrial-1_cvr.nii.gz      001  05  norm/001_10_breathhold_optcom_ntrial-1_tstat.nii.gz  norm/001_10_breathhold_optcom_ntrial-1_cvr.nii.gz      002  01  norm/002_01_breathhold_optcom_ntrial-1_tstat.nii.gz  norm/002_01_breathhold_optcom_ntrial-1_cvr.nii.gz      002  02  norm/002_02_breathhold_optcom_ntrial-1_tstat.nii.gz  norm/002_02_breathhold_optcom_ntrial-1_cvr.nii.gz      002  03  norm/002_03_breathhold_optcom_ntrial-1_tstat.nii.gz  norm/002_03_breathhold_optcom_ntrial-1_cvr.nii.gz      002  04  norm/002_04_breathhold_optcom_ntrial-1_tstat.nii.gz  norm/002_04_breathhold_optcom_ntrial-1_cvr.nii.gz      002  05
[...]

The AFNI version, compiled in a container, is: 
Precompiled binary linux_ubuntu_16_64_glw_local_shared: May  9 2023 (Version AFNI_22.3.07 'Lucius Verus')

Unfortunately I did not manage to interpret the error myself, and I wouldn't be able to pinpoint it better.
The other unfortunate thing is that I run this code without any problem on a different version of the same container (Built on April 21 2023).

What could be the issue behind it?

Thank you,
Stefano
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Subject Author Posted

3dICC error in is.null(ss), calls: read.ICC.opts.batch -> parse.AFNI.args -> is.num.string

smoia May 10, 2023 11:55AM