AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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May 16, 2023 08:51PM
Hi all,

I am facing a challenge with processing T1w images that have a noisy background making it difficult to process them with 3dSkullStrip and @SSwarper (see image attached). Do you have any idea how to tackle this problem?

Happy to provide an example nifti.

Thanks and bests,
Philipp
Attachments:
open | download - T1w_SS_failure.png (1.69 MB)
Subject Author Posted

Problem with processing T1w with noisy background Attachments

philippn May 16, 2023 08:51PM

Re: Problem with processing T1w with noisy background

ptaylor May 17, 2023 01:32AM

Re: Problem with processing T1w with noisy background Attachments

philippn May 17, 2023 11:12AM

Re: Problem with processing T1w with noisy background

storrisi May 17, 2023 05:28PM

Re: Problem with processing T1w with noisy background

ptaylor May 18, 2023 09:33AM

Re: Problem with processing T1w with noisy background Attachments

philippn May 18, 2023 10:40AM

Re: Problem with processing T1w with noisy background

ptaylor May 18, 2023 11:09AM

Re: Problem with processing T1w with noisy background Attachments

philippn May 18, 2023 02:06PM