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November 25, 2002 11:42AM
Your script should almost work as you plan. Some minor points:

* you need to supply +tlrc or +orig on the input datasets in the 3dcalc lines

* you mv sfnmask+tlrc into the dataset directory, but then use adolmask+tlrc, and at the end, move the latter back to the scripts directory

* you could just use "-mask ../scripts/adolmask+tlrc" as the input to 3dmaskave - that should work, and would prevent the repeated mv-ing around of the mask file (whatever name it has)

* I personally would prefer to use something like ${subject}_rnaccant.txt as the output file, since the underscore would visually separate the subject identifier from the rest of the filename

* In 3dcalc, if the "-a" dataset is a 3D+time dataset but the "-b" dataset is just an single 3D volume, then the program automatically treats the "-b" dataset as if it had the same time axis as the "-a" dataset, and the single data value in each "-b" voxel is replicated along the time axis - this is what you need here (i.e., you don't have to make a temporary 3D+time dataset out of your TimeSerAvg datasets)

bob cox
Subject Author Posted

Getting timecourse dumps of voxel-wise deviations from session mean

Jim Bjork November 21, 2002 02:02PM

Re: Getting timecourse dumps of voxel-wise deviations from session mean

bob cox November 25, 2002 11:42AM



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