AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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March 11, 2003 06:17PM

Hello Arika:

The -maxlag option is to allow for modeling of the signal delays due to the
hemodynamic response (IRF). This, in principle, is independent of the length
of the stimulus presentation. The system response is modeled as the convolution
of the input stimulus function with the IRF. Therefore, the modeled response
can be of arbitrary length, even though the IRF itself is short. It's probably
better to use the same -maxlag value for each of the conditions, unless there
is some reason for doing otherwise.

If the input stimulus function represents the extent of the stimulus duration,
i.e., 1's at each time point during stimulus presentation, then the modeled
response will be of similar (though somewhat longer) duration. You did not
specify the TR, but suppose TR = 2 sec. And suppose maxlag = 4 for each of the
conditions. Then the movie duration would be represented by 6 consecutive 1's.
The modeled response could be of duration (6+4)*2 = 20 seconds, even though
the estimated IRF is only of duration (4+1)*2 = 10 seconds.

As always, use the Deconvolution plugin to visually verify that the model is
adequate.

Doug Ward
Subject Author Posted

Deconvolution with different maxlags

Arika Okrent March 11, 2003 04:23PM

Re: Deconvolution with different maxlags

B. Douglas Ward March 11, 2003 06:17PM