Hi All,
I am back to square one, I think. I am trying to create a group map of my data, and am not sure which tool to use. First, let me tell you my design:

I have 7 subjects and they each undergo 2 scans on one day. Each scan is different. The first scan has baseline plus 3 conditions, the second scan has baseline plus 4 conditions. I have used 3dDeconvolve to generate regression coefficients for each condition and a several glts, and used both the paradigm and the motion parameters as regressors.

When I wrote before (without the above info), Christine suggested that I use a mixed effects ANOVA with 3dANOVA2, but she did not know that there was only 1 scan per subject and only 7 subjects. I tried to do it, but my p-values were horrible (in the .1-.9 range) although the values for the individuals were in the .0001 range. My local statistician first suggested I do a fixed (instead of mixed) ANOVA since I had only 7 subjects, but afni said I did not have enough data (because there was only 1 scan per subject I think). My local stats guy then said he thought I should use 3dRegAna instead, but we have not been able to figure out how exactly to set up the command. So my questions are - is 3dRegAna the correct tool, and if so, what should the command look like. If it is not the correct tool, then what is? If 3dANOVA is the correct tool, what are the correct settings? We have read the .ps files, but have been rather stumped.

The second question I have is about calculating area under the curve. I do not have any lags in my deconvolution, and Christine said she did not know what the proper way to calculate this would be if there was not a lag, and that I should ask the rest of the AFNI community.

Much thanks!
Sara