AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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May 09, 2003 07:17PM
Dear Doug,

this msg is somewhat related to another posting on the subject, so apologies for the overlap.

If one had a factor that assumed a set of increasing values (say low, medium, high, very high), we could test for a parametric increase by having the following contrast: -2 -1 1 2

However, if we had 3 levels only, then (-1 0 1) would be problematic because we are essentially testing whether we can refute the null hypothesis that beta1 = beta3. Is this interpretation correct? Or do we have an "implicit" parametric test even when beta2 is zeroed?

Also, even in the first case with 4 levels, the situation is not so simple as we are really testing whether 2*beta1 + beta2 = beta3 + 2*beta4. Here a linear increase would rejetc the null hypothesis, but so would several other combinations! (some of which we perhaps are not interested in)

Perhaps we could follow Bob's suggestion in the earlier posting of doing pairwise tests and conjunctive masks: (beta2 > beta1) && (beta3 > beta2) && (beta4 > beta3). This seems fine to me, but I'm not sure what statistitians would say (maybe something like "you should use orthogonal polynomials and test it hierarchically for the highest order that is significant...").

Anyway, your thoughts on this are much appreciated,

Luiz
Subject Author Posted

parametric effects

Luiz Pessoa May 09, 2003 07:17PM

Re: parametric effects

B. Douglas Ward May 12, 2003 10:58AM