AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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July 25, 2003 12:09PM
Hi!

It is a quite simple question, but I do not have any idea, how I can do that.
I want to write out TT-co-ordinates and z-scores of local maxima of a functional dataset, which is already converted to z-score( zsc+tlrc).
After using 3dExtrema I get a dataset ext+tlrc containing 1s on locations, where the program found local maxima.
I thought I could just multiply these datsets:
3dcalc -a ext+tlrc -b zsc+tlrc -expr "a*b" -prefix zext
and write the dataset out in a text file:
3dmaskdump -noijk -xyz -mask ext+tlrc -o table zext+tlrc

However, I get an output like this:
47 124 16 2

However, the fourth number should be the voxel value, if I understood the program right. But it is always an integer.... and no z-score..

Does anybody know, what I have missed ?


Lukas
Subject Author Posted

writing out z-scores

Lukas Pezawas July 25, 2003 12:09PM

Re: writing out z-scores

Christine Smith July 25, 2003 01:16PM

Re: writing out z-scores

Lukas Pezawas July 25, 2003 02:50PM

Re: writing out z-scores

bob cox July 25, 2003 03:37PM

Re: writing out z-scores

Lukas Pezawas July 25, 2003 08:03PM

Re: writing out z-scores

Lukas Pezawas July 25, 2003 08:17PM

Re: writing out z-scores

bob cox July 26, 2003 05:21PM

Re: writing out z-scores

Lukas Pezawas July 26, 2003 05:43PM

Re: writing out z-scores

Tom Ross July 25, 2003 04:48PM