AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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May 18, 2012 12:49PM
HI Xiaozhen,

> According to your opinion, I did not use gender as a covariate any more.

If you prefer, you can still model the gender effect with 3dttest++ with both options -setA and -setB.

> 3dttest++ -setA subjects_image_file -covariates covariate_file -prefix test_result

Did you center your covariates? Read the help of 3dttest++ for the details regarding centering:

3dttest++ -help | less

> The results include 6 sub-bricks, setA mean, setA Tstat, setA age-mean, setA age-Tstat,
> setA blood-test-mean, setA blood-test-Tstat. How to explain the result based on what I want?

The first two sub-bricks ( setA mean, setA Tstat) are for the group effect controlled at the center values of the two covariates. The next two (setA age-mean, setA age-Tstat) are for the marginal effect (slope) of age. And the last two are about the slope of blood test.

> I assume that every subject is a time point of whole group when I use 3dDeconvolve to remove
> age effect, then I use 3dTcorr1D to get the correlation coefficient between residual and blood-test
> result. Is that okay?

I'm not so sure why you're talking about time point. You referred in your original post the z-score from some other analysis at individual level. So I've been assuming that you're taking one z-score volume for group analysis; and 3dttest++ would give you all you want. Why bother 3dDeconvolve + 3dTcorr1D? Unless you're talking about something else...

Gang
Subject Author Posted

request for calculating voxelwise correlation coefficient help

Xiaozhen Li May 14, 2012 04:36AM

Re: request for calculating voxelwise correlation coefficient help

Daniel Glen May 14, 2012 10:59AM

Re: request for calculating voxelwise correlation coefficient help

Gang Chen May 14, 2012 11:24AM

Re: request for calculating voxelwise correlation coefficient help

Xiaozhen Li May 14, 2012 02:35PM

Re: request for calculating voxelwise correlation coefficient help

Gang Chen May 14, 2012 03:41PM

Re: request for calculating voxelwise correlation coefficient help

Xiaozhen Li May 15, 2012 02:12PM

Re: request for calculating voxelwise correlation coefficient help

Gang Chen May 16, 2012 09:57AM

Re: request for calculating voxelwise correlation coefficient help

Xiaozhen Li May 18, 2012 02:18AM

Re: request for calculating voxelwise correlation coefficient help

gang May 18, 2012 12:49PM

Re: request for calculating voxelwise correlation coefficient help

Xiaozhen Li May 18, 2012 01:53PM

Re: request for calculating voxelwise correlation coefficient help

gang May 18, 2012 02:12PM

Re: request for calculating voxelwise correlation coefficient help

Xiaozhen Li May 18, 2012 02:59PM

Re: request for calculating voxelwise correlation coefficient help

moreau January 04, 2017 11:59AM

Re: request for calculating voxelwise correlation coefficient help

gang January 05, 2017 08:48AM