1dRplot
1d_tool.py
1dplot.py
3dICC
3dISC
3dLME
3dLME2
3dLMEr
3dLocalUnifize
3dMEMA
3dMEPFM
3dMSS
3dMVM
3dMVM_validator
3dPAR2AFNI.pl
3dPFM
3dRprogDemo
3dSignatures
@1dDiffMag
@2dwarper
@2dwarper.Allin
@4Daverage
@ANATICOR
@AddEdge
@AfniEnv
@AfniOrient2RAImap
@AfniOrientSign
@Align_Centers
@Atlasize
@Center_Distance
@CheckForAfniDset
@ClustExp_CatLab
@ClustExp_run_shiny
@CommandGlobb
@DO.examples
@DeblankFileNames
@DiceMetric
@DriveAfni
@DriveSuma
@ElectroGrid
@ExamineGenFeatDists
@FS_roi_label
@FSlabel2dset
@FindAfniDsetPath
@FromRAI
@FullPath
@GetAfniBin
@GetAfniDims
@GetAfniID
@GetAfniOrient
@GetAfniPrefix
@GetAfniRes
@GetAfniView
@GradFlipTest
@Install_3dPFM_Demo
@Install_APMULTI_Demo1_rest
@Install_APMULTI_Demo2_realtime
@Install_AfniRetinoDemo
@Install_ClustScat_Demo
@Install_D99_macaque
@Install_DBSproc
@Install_FATCAT_DEMO
@Install_FATCAT_DEMO2
@Install_FATMVM_DEMO
@Install_IBT_DATASETS
@Install_InstaCorr_Demo
@Install_MACAQUE_DEMO
@Install_MACAQUE_DEMO_REST
@Install_MBM_Marmoset
@Install_MEICA_Demo
@Install_NIH_Marmoset
@Install_NMT
@Install_RAT_DEMO_REST
@Install_RSFMRI_Motion_Group_Demo
@Install_SAM_marmoset
@Install_SURFLAYERS_DEMO1
@Install_TSrestMovieDemo
@IsoMasks
@MakeLabelTable
@NoExt
@NoPound
@NoisySkullStrip
@Purify_1D
@Quiet_Talkers
@ROI_Corr_Mat
@ROI_decluster
@ROI_modal_grow
@R_funclist
@RenamePanga
@Reorder
@RetinoProc
@SSwarper
@SUMA_AlignToExperiment
@SUMA_FSvolToBRIK
@SUMA_Make_Spec_Caret
@SUMA_Make_Spec_FS
@SUMA_Make_Spec_SF
@SUMA_renumber_FS
@ScaleVolume
@ScriptCheck
@Shift_Volume
@ShowDynamicRange
@SkullStrip_TouchUp
@Spharm.examples
@SurfSmooth.HEAT_07.examples
@T1scale
@TimeDiff
@ToRAI
@VolCenter
@afni.run.me
@afni_R_package_install
@afni_refacer_make_master
@afni_refacer_make_master_addendum
@afni_refacer_make_onebigA12
@afni_refacer_run
@align_partial_oblique
@animal_warper
@auto_tlrc
@build_afni_Xlib
@chauffeur_afni
@clean_help_dir
@clip_volume
@compute_OC_weights
@compute_gcor
@demo_prompt
@diff.files
@diff.tree
@djunct_4d_imager
@djunct_4d_slices_to_3d_vol
@djunct_anonymize
@djunct_dwi_selector.tcsh
@djunct_edgy_align_check
@djunct_glue_imgs_vert
@djunct_json_value.py
@djunct_modal_smoothing_with_rep
@djunct_montage_coordinator
@djunct_overlap_check
@djunct_slice_space
@djunct_ssw_intermed_edge_imgs
@djunct_vol_3slice_select
@escape-
@extract_meica_ortvec
@fast_roi
@fat_tract_colorize
@fix_FSsphere
@float_fix
@get.afni.version
@global_parse
@grayplot
@help.AFNI
@isOblique
@make_plug_diff
@measure_bb_thick
@measure_erosion_thick
@measure_in2out
@move.to.series.dirs
@np
@parse_afni_name
@parse_name
@radial_correlate
@simulate_motion
@snapshot_volreg
@statauxcode
@suma_acknowledge
@suma_reprefixize_spec
@surf_to_vol_spackle
@thickness_master
@toMNI_Awarp
@toMNI_Qwarpar
@update.afni.binaries
@xyz_to_ijk
AFNI_Batch_R
BayesianGroupAna.py
ClustExp_HistTable.py
ClustExp_StatParse.py
ExamineXmat
FATCAT_matplot
MBA
PTA
RBA
SurfLayers
TRR
abids_json_info.py
abids_json_tool.py
abids_tool.py
adjunct_apqc_tsnr_general
adjunct_atlas_points_to_labeltable
adjunct_aw_tableize_roi_info.py
adjunct_calc_mont_dims.py
adjunct_combine_str.py
adjunct_deob_around_origin
adjunct_is_label.py
adjunct_make_script_and_rst.py
adjunct_middle_pair_mask
adjunct_select_str.py
adjunct_simplify_cost.py
adjunct_suma_fs_mask_and_qc
adjunct_suma_fs_roi_info
adjunct_tort_plot_dp_align
adjunct_tort_read_dp_align.py
afni_proc.py
afni_python_wrapper.py
afni_run_R
afni_skeleton.py
afni_system_check.py
align_epi_anat.py
ap_run_simple_rest.tcsh
ap_run_simple_rest_me.tcsh
apqc_make_html.py
apqc_make_tcsh.py
auto_warp.py
bayes_view
build_afni.py
colorbar_tool.py
compute_ROI_stats.tcsh
convert_cdiflist_to_grads.py
desphinxify
eg_main_chrono.py
epi_b0_correct.py
fat_mat2d_plot.py
fat_mat_sel.py
fat_mat_tableize.py
fat_mvm_gridconv.py
fat_mvm_prep.py
fat_mvm_scripter.py
fat_proc_align_anat_pair
fat_proc_axialize_anat
fat_proc_connec_vis
fat_proc_convert_dcm_anat
fat_proc_convert_dcm_dwis
fat_proc_decmap
fat_proc_dwi_to_dt
fat_proc_filter_dwis
fat_proc_imit2w_from_t1w
fat_proc_map_to_dti
fat_proc_select_vols
fat_roi_row.py
find_variance_lines.tcsh
gen_cluster_table
gen_epi_review.py
gen_group_command.py
gen_ss_review_scripts.py
gen_ss_review_table.py
gtkyd_check.py
init_user_dotfiles.py
lesion_align
make_pq_script.py
make_random_timing.py
make_stim_times.py
map_ap_to_deriv.py
neuro_deconvolve.py
open_apqc.py
parse_fs_lt_log.py
physio_calc.py
python_module_test.py
quick.alpha.vals.py
quickspecSL
rPkgsInstall
read_matlab_files.py
realtime_receiver.py
roi_stats_warnings.py
slow_surf_clustsim.py
sswarper2
suma_change_spec
tedana_wrapper.py
test_afni_prog_help.tcsh
timing_tool.py
uber_align_test.py
uber_proc.py
uber_skel.py
uber_subject.py
uber_ttest.py
unWarpEPI.py
xmat_tool.py