#File content generated by 'make prog_list'
#You can compare its contents to the inferred list from:
#  apsearch -list_all_afni_progs | LC_COLLATE=C sort | uniq


1dApar2mat
1dAstrip
1dBandpass
1dBport
1dCorrelate
1dDW_Grad_o_Mat++
1dFlagMotion
1dMarry
1dNLfit
1dRplot
1dSEM
1dTsort
1dUpsample
1d_tool.py
1dcat
1ddot
1deval
1dfft
1dgenARMA11
1dgrayplot
1dmatcalc
1dnorm
1dplot
1dplot.py
1dsound
1dsum
1dsvd
1dtranspose
24swap
2dImReg
2dcat
2perm
2swap
3dABoverlap
3dAFNIto3D
3dAFNItoANALYZE
3dAFNItoNIFTI
3dAFNItoNIML
3dAFNItoRaw
3dANOVA
3dANOVA2
3dANOVA3
3dAcost
3dAllineate
3dAmpToRSFC
3dAnhist
3dAttribute
3dAutoTcorrelate
3dAutobox
3dAutomask
3dBRAIN_VOYAGERtoAFNI
3dBallMatch
3dBandpass
3dBlurInMask
3dBlurToFWHM
3dBrainSync
3dBrickStat
3dCM
3dCRUISEtoAFNI
3dClipLevel
3dClustCount
3dClustSim
3dClusterize
3dCompareAffine
3dConformist
3dConvolve
3dDFT
3dDTeig
3dDTtoDWI
3dDTtoNoisyDWI
3dDWItoDT
3dDWUncert
3dDeconvolve
3dDegreeCentrality
3dDepthMap
3dDespike
3dDetrend
3dDiff
3dECM
3dEdu_01_scale
3dEigsToDT
3dEmpty
3dEntropy
3dErrtsCormat
3dExchange
3dExtractGroupInCorr
3dExtrema
3dFDR
3dFFT
3dFWHMx
3dFriedman
3dGenFeatureDist
3dGenPriors
3dGetrow
3dGrayplot
3dGroupInCorr
3dHist
3dICC
3dISC
3dIntracranial
3dInvFMRI
3dKruskalWallis
3dLFCD
3dLME
3dLME2
3dLMEr
3dLRflip
3dLSS
3dLocalACF
3dLocalBistat
3dLocalHistog
3dLocalPV
3dLocalSVD
3dLocalUnifize
3dLocalstat
3dLombScargle
3dMEMA
3dMEPFM
3dMSE
3dMSS
3dMVM
3dMVM_validator
3dMannWhitney
3dMaskToASCII
3dMatch
3dMean
3dMedianFilter
3dMultiThresh
3dNLfim
3dNetCorr
3dNormalityTest
3dNotes
3dNwarpAdjust
3dNwarpApply
3dNwarpCalc
3dNwarpCat
3dNwarpFuncs
3dNwarpXYZ
3dOverlap
3dPAR2AFNI.pl
3dPFM
3dPVmap
3dPeriodogram
3dPolyfit
3dPval
3dQwarp
3dREMLfit
3dROIMaker
3dROIstats
3dRSFC
3dRank
3dRankizer
3dReHo
3dRegAna
3dRetinoPhase
3dRowFillin
3dRprogDemo
3dSeg
3dSetupGroupInCorr
3dSharpen
3dSignatures
3dSkullStrip
3dSliceNDice
3dSpaceTimeCorr
3dSpatNorm
3dStatClust
3dSurf2Vol
3dSurfMask
3dSynthesize
3dTORTOISEtoHere
3dTRfix
3dTSgen
3dTagalign
3dTcat
3dTcorr1D
3dTcorrMap
3dTcorrelate
3dTfilter
3dTfitter
3dThreetoRGB
3dTnorm
3dToutcount
3dToyProg
3dTproject
3dTqual
3dTrackID
3dTshift
3dTsmooth
3dTsort
3dTsplit4D
3dTstat
3dTto1D
3dTwotoComplex
3dUndump
3dUnifize
3dUpsample
3dVecRGB_to_HSL
3dVol2Surf
3dWarp
3dWarpDrive
3dWilcoxon
3dWinsor
3dXClustSim
3dXYZcat
3dZcat
3dZcutup
3dZeropad
3dZipperZapper
3dZregrid
3danisosmooth
3daxialize
3dbucket
3dcalc
3dclust
3dcopy
3ddelay
3ddot
3ddot_beta
3dedge3
3dedgedog
3dfim+
3dfractionize
3dhistog
3dinfill
3dinfo
3dkmeans
3dmaskSVD
3dmask_tool
3dmaskave
3dmaskdump
3dmatcalc
3dmatmult
3dmaxdisp
3dmaxima
3dmerge
3dnewid
3dnvals
3dpc
3drefit
3drename
3dresample
3dretroicor
3drotate
3dsvm
3dsvm_linpredict
3dtoXdataset
3dttest++
3dvolreg
4swap
@1dDiffMag
@2dwarper
@2dwarper.Allin
@4Daverage
@ANATICOR
@AddEdge
@AfniEnv
@AfniOrient2RAImap
@AfniOrientSign
@Align_Centers
@Atlasize
@Center_Distance
@CheckForAfniDset
@ClustExp_CatLab
@ClustExp_run_shiny
@CommandGlobb
@DO.examples
@DeblankFileNames
@DiceMetric
@DriveAfni
@DriveSuma
@ElectroGrid
@ExamineGenFeatDists
@FS_roi_label
@FSlabel2dset
@FindAfniDsetPath
@FromRAI
@FullPath
@GetAfniBin
@GetAfniDims
@GetAfniID
@GetAfniOrient
@GetAfniPrefix
@GetAfniRes
@GetAfniView
@GradFlipTest
@Install_3dPFM_Demo
@Install_APMULTI_Demo1_rest
@Install_APMULTI_Demo2_realtime
@Install_AfniRetinoDemo
@Install_ClustScat_Demo
@Install_D99_macaque
@Install_DBSproc
@Install_FATCAT_DEMO
@Install_FATCAT_DEMO2
@Install_FATMVM_DEMO
@Install_IBT_DATASETS
@Install_InstaCorr_Demo
@Install_MACAQUE_DEMO
@Install_MACAQUE_DEMO_REST
@Install_MBM_Marmoset
@Install_MEICA_Demo
@Install_NIH_Marmoset
@Install_NMT
@Install_RAT_DEMO_REST
@Install_RSFMRI_Motion_Group_Demo
@Install_SAM_marmoset
@Install_SURFLAYERS_DEMO1
@Install_TSrestMovieDemo
@IsoMasks
@MakeLabelTable
@NoExt
@NoPound
@NoisySkullStrip
@Purify_1D
@Quiet_Talkers
@ROI_Corr_Mat
@ROI_decluster
@ROI_modal_grow
@R_funclist
@RenamePanga
@Reorder
@RetinoProc
@SSwarper
@SUMA_AlignToExperiment
@SUMA_FSvolToBRIK
@SUMA_Make_Spec_Caret
@SUMA_Make_Spec_FS
@SUMA_Make_Spec_SF
@SUMA_renumber_FS
@ScaleVolume
@ScriptCheck
@Shift_Volume
@ShowDynamicRange
@SkullStrip_TouchUp
@Spharm.examples
@SurfSmooth.HEAT_07.examples
@T1scale
@TimeDiff
@ToRAI
@VolCenter
@afni.run.me
@afni_R_package_install
@afni_refacer_make_master
@afni_refacer_make_master_addendum
@afni_refacer_make_onebigA12
@afni_refacer_run
@align_partial_oblique
@animal_warper
@auto_tlrc
@build_afni_Xlib
@chauffeur_afni
@clean_help_dir
@clip_volume
@compute_OC_weights
@compute_gcor
@demo_prompt
@diff.files
@diff.tree
@djunct_4d_imager
@djunct_4d_slices_to_3d_vol
@djunct_anonymize
@djunct_dwi_selector.tcsh
@djunct_edgy_align_check
@djunct_glue_imgs_vert
@djunct_json_value.py
@djunct_modal_smoothing_with_rep
@djunct_montage_coordinator
@djunct_overlap_check
@djunct_slice_space
@djunct_ssw_intermed_edge_imgs
@djunct_vol_3slice_select
@escape-
@extract_meica_ortvec
@fast_roi
@fat_tract_colorize
@fix_FSsphere
@float_fix
@get.afni.version
@global_parse
@grayplot
@help.AFNI
@isOblique
@make_plug_diff
@measure_bb_thick
@measure_erosion_thick
@measure_in2out
@move.to.series.dirs
@np
@parse_afni_name
@parse_name
@radial_correlate
@simulate_motion
@snapshot_volreg
@statauxcode
@suma_acknowledge
@suma_reprefixize_spec
@surf_to_vol_spackle
@thickness_master
@toMNI_Awarp
@toMNI_Qwarpar
@update.afni.binaries
@xyz_to_ijk
AFNI_Batch_R
AnalyzeTrace
BayesianGroupAna.py
BrainSkin
ClustExp_HistTable.py
ClustExp_StatParse.py
CompareSurfaces
ConvertDset
ConvertSurface
ConvexHull
CreateIcosahedron
DTIStudioFibertoSegments
Dimon
DriveSuma
ExamineXmat
FATCAT_matplot
FIRdesign
FSread_annot
GLTsymtest
HalloSuma
InstaTract
IsoSurface
MBA
MakeColorMap
MapIcosahedron
PTA
ParseName
RBA
ROI2dataset
ROIgrow
RSFgen
SUMA_glxdino
SUMA_paperplane
SUMA_pixmap2eps
SampBias
ScaleToMap
SpharmDeco
SpharmReco
Surf2VolCoord
SurfClust
SurfDist
SurfDsetInfo
SurfExtrema
SurfFWHM
SurfInfo
SurfLayers
SurfLocalstat
SurfMeasures
SurfMesh
SurfPatch
SurfQual
SurfRetinoMap
SurfSmooth
SurfToSurf
SurfaceMetrics
TRR
Vecwarp
abids_json_info.py
abids_json_tool.py
abids_tool.py
adjunct_apqc_tsnr_general
adjunct_atlas_points_to_labeltable
adjunct_aw_tableize_roi_info.py
adjunct_calc_mont_dims.py
adjunct_combine_str.py
adjunct_deob_around_origin
adjunct_is_label.py
adjunct_make_script_and_rst.py
adjunct_middle_pair_mask
adjunct_select_str.py
adjunct_simplify_cost.py
adjunct_suma_fs_mask_and_qc
adjunct_suma_fs_roi_info
adjunct_tort_plot_dp_align
adjunct_tort_read_dp_align.py
adwarp
afni
afni_check_omp
afni_history
afni_open
afni_proc.py
afni_python_wrapper.py
afni_run_R
afni_skeleton.py
afni_system_check.py
afni_vcheck
aiv
align_epi_anat.py
ap_run_simple_rest.tcsh
ap_run_simple_rest_me.tcsh
apqc_make_html.py
apqc_make_tcsh.py
apsearch
auto_warp.py
bayes_view
build_afni.py
byteorder
cat_matvec
ccalc
cdf
cifti_tool
cjpeg
column_cat
compute_ROI_stats.tcsh
convert_cdiflist_to_grads.py
count
count_afni
dcm2niix_afni
desphinxify
dicom_hdr
dicom_hinfo
dicom_to_raw
djpeg
dsetstat2p
eg_main_chrono.py
epi_b0_correct.py
fat_mat2d_plot.py
fat_mat_sel.py
fat_mat_tableize.py
fat_mvm_gridconv.py
fat_mvm_prep.py
fat_mvm_scripter.py
fat_proc_align_anat_pair
fat_proc_axialize_anat
fat_proc_connec_vis
fat_proc_convert_dcm_anat
fat_proc_convert_dcm_dwis
fat_proc_decmap
fat_proc_dwi_to_dt
fat_proc_filter_dwis
fat_proc_imit2w_from_t1w
fat_proc_map_to_dti
fat_proc_select_vols
fat_roi_row.py
fdrval
fftest
file_tool
fim2
find_variance_lines.tcsh
float_scan
from3d
gen_cluster_table
gen_epi_review.py
gen_group_command.py
gen_ss_review_scripts.py
gen_ss_review_table.py
get_afni_model_PRF
get_afni_model_PRF_6
get_afni_model_PRF_6_BAD
gifti_tool
gtkyd_check
help_format
im2niml
images_equal
imand
imaver
imcalc
imcat
imcutup
imdump
immask
imreg
imrotate
imstack
imstat
imupsam
init_user_dotfiles.py
inspec
lesion_align
make_pq_script.py
make_random_timing.py
make_stim_times.py
map_TrackID
map_ap_to_deriv.py
mycat
myget
neuro_deconvolve.py
nicat
niccc
nifti1_tool
nifti_tool
niml_feedme
niprobe
nsize
open_apqc.py
p2dsetstat
parse_fs_lt_log.py
physio_calc.py
plugout_drive
plugout_ijk
plugout_tt
plugout_tta
prompt_popup
prompt_user
python_module_test.py
qdelaunay
qhull
quick.alpha.vals.py
quickspec
quickspecSL
quotize
rPkgsInstall
rbox
read_matlab_files.py
realtime_receiver.py
rmz
roi_stats_warnings.py
rotcom
rtfeedme
serial_helper
sfim
slow_surf_clustsim.py
sswarper2
stimband
strblast
suma
suma_change_spec
tedana_wrapper.py
test_afni_prog_help.tcsh
tfim
timing_tool.py
to3d
tokens
uber_align_test.py
uber_proc.py
uber_skel.py
uber_subject.py
uber_ttest.py
unWarpEPI.py
uniq_images
waver
whereami
whereami_afni
whirlgif
xmat_tool.py