#!/bin/tcsh

# analyze all subjects using afni_proc.py (scripts/cmd.ap.general)
# do not assume any groups to begin with

set ap_script = scripts/cmd.ap.general

set anat_files = ( input_data/anat*.nii.gz )
set nsubj = $#anat_files

echo "== will analyze $nsubj subjects"

foreach index ( `count -digits 1 1 $nsubj` )

   # grab the SID from the anat dataset name
   set sid = `echo $anat_files[$index] | cut -b 17-24`

   echo "processing $sid ($index of $nsubj)..."

   # do the work
   tcsh $ap_script $sid

end