setenv OMP_NUM_THREADS 1 set ecode = 0 set subj = sub-005 set ses = ses-01 set template = MNI152_2009_template_SSW.nii.gz set dir_inroot = /data/APMULTI/APMULTI_TEST/apmulti_root.005/apmulti_demo set dir_log = /data/APMULTI/APMULTI_TEST/apmulti_root.005/apmulti_demo/logs set dir_basic = /data/APMULTI/APMULTI_TEST/apmulti_root.005/apmulti_demo/data_00_basic set dir_fs = /data/APMULTI/APMULTI_TEST/apmulti_root.005/apmulti_demo/data_12_fs set dir_ssw = /data/APMULTI/APMULTI_TEST/apmulti_root.005/apmulti_demo/data_13_ssw set dir_physio = /data/APMULTI/APMULTI_TEST/apmulti_root.005/apmulti_demo/data_14_physio set dir_ap_se = /data/APMULTI/APMULTI_TEST/apmulti_root.005/apmulti_demo/data_20_ap_se set dir_ap_me = /data/APMULTI/APMULTI_TEST/apmulti_root.005/apmulti_demo/data_21_ap_me set dir_ap_me_b = /data/APMULTI/APMULTI_TEST/apmulti_root.005/apmulti_demo/data_22_ap_me_b set dir_ap_me_bt = /data/APMULTI/APMULTI_TEST/apmulti_root.005/apmulti_demo/data_23_ap_me_bt set dir_ap_me_bts = /data/APMULTI/APMULTI_TEST/apmulti_root.005/apmulti_demo/data_24_ap_me_bts set sdir_basic = /data/APMULTI/APMULTI_TEST/apmulti_root.005/apmulti_demo/data_00_basic/sub-005/ses-01 set sdir_epi = /data/APMULTI/APMULTI_TEST/apmulti_root.005/apmulti_demo/data_00_basic/sub-005/ses-01/func set sdir_fs = /data/APMULTI/APMULTI_TEST/apmulti_root.005/apmulti_demo/data_12_fs/sub-005/ses-01 set sdir_suma = /data/APMULTI/APMULTI_TEST/apmulti_root.005/apmulti_demo/data_12_fs/sub-005/ses-01/SUMA set sdir_ssw = /data/APMULTI/APMULTI_TEST/apmulti_root.005/apmulti_demo/data_13_ssw/sub-005/ses-01 set sdir_physio = /data/APMULTI/APMULTI_TEST/apmulti_root.005/apmulti_demo/data_14_physio/sub-005/ses-01 set sdir_ap_se = /data/APMULTI/APMULTI_TEST/apmulti_root.005/apmulti_demo/data_20_ap_se/sub-005/ses-01 set sdir_ap_me = /data/APMULTI/APMULTI_TEST/apmulti_root.005/apmulti_demo/data_21_ap_me/sub-005/ses-01 set sdir_ap_me_b = /data/APMULTI/APMULTI_TEST/apmulti_root.005/apmulti_demo/data_22_ap_me_b/sub-005/ses-01 set sdir_ap_me_bt = /data/APMULTI/APMULTI_TEST/apmulti_root.005/apmulti_demo/data_23_ap_me_bt/sub-005/ses-01 set sdir_ap_me_bts = /data/APMULTI/APMULTI_TEST/apmulti_root.005/apmulti_demo/data_24_ap_me_bts/sub-005/ses-01 set sdir_work = /data/APMULTI/APMULTI_TEST/apmulti_root.005/apmulti_demo/data_14_physio/sub-005/ses-01 set task_label = task-rest_run-1_physio set physio_card = sub-005_ses-01_task-rest_run-1_physio-ECG.txt set physio_resp = sub-005_ses-01_task-rest_run-1_physio-Resp.txt set nthr_avail = `afni_system_check.py -check_all | grep "number of CPUs:" | awk '{print $4}'` afni_system_check.py -check_all awk {print $4} grep number of CPUs: set nthr_using = `afni_check_omp` afni_check_omp echo ++ INFO: Using 40 of available 1 threads ++ INFO: Using 40 of available 1 threads if ( -d /lscratch/25105640 ) then set usetemp = 0 endif mkdir -p /data/APMULTI/APMULTI_TEST/apmulti_root.005/apmulti_demo/data_14_physio/sub-005/ses-01 cp -p /data/APMULTI/APMULTI_TEST/apmulti_root.005/apmulti_demo/data_00_basic/sub-005/ses-01/func/sub-005_ses-01_task-rest_run-1_physio-ECG.txt /data/APMULTI/APMULTI_TEST/apmulti_root.005/apmulti_demo/data_14_physio/sub-005/ses-01 cp -p /data/APMULTI/APMULTI_TEST/apmulti_root.005/apmulti_demo/data_00_basic/sub-005/ses-01/func/sub-005_ses-01_task-rest_run-1_physio-Resp.txt /data/APMULTI/APMULTI_TEST/apmulti_root.005/apmulti_demo/data_14_physio/sub-005/ses-01 cd /data/APMULTI/APMULTI_TEST/apmulti_root.005/apmulti_demo/data_14_physio/sub-005/ses-01 set run_script = run_retrots.txt cat tcsh -xf run_retrots.txt tee out.run_retrots.txt wc sub-005_ses-01_task-rest_run-1_physio-Resp.txt sub-005_ses-01_task-rest_run-1_physio-ECG.txt 24200 24200 145105 sub-005_ses-01_task-rest_run-1_physio-Resp.txt 24200 24200 108985 sub-005_ses-01_task-rest_run-1_physio-ECG.txt 48400 48400 254090 total RetroTS.py -prefix sub-005_ses-01_task-rest_run-1_physio -r sub-005_ses-01_task-rest_run-1_physio-Resp.txt -c sub-005_ses-01_task-rest_run-1_physio-ECG.txt -p 50 -n 33 -v 2.2 pause [ 2.00000000e-02 2.24000000e+00 6.48000000e+00 1.09200000e+01 1.49200000e+01 1.84800000e+01 2.25400000e+01 2.64800000e+01 2.98400000e+01 3.33800000e+01 3.69000000e+01 4.01400000e+01 4.45400000e+01 4.80200000e+01 5.13200000e+01 5.63200000e+01 5.97600000e+01 6.35600000e+01 6.78800000e+01 7.10600000e+01 7.48400000e+01 7.83200000e+01 8.16600000e+01 8.54800000e+01 8.93000000e+01 9.38200000e+01 9.72400000e+01 1.01740000e+02 1.04840000e+02 1.08640000e+02 1.12280000e+02 1.16000000e+02 1.19640000e+02 1.23320000e+02 1.26680000e+02 1.30040000e+02 1.33980000e+02 1.38000000e+02 1.41920000e+02 1.46200000e+02 1.50380000e+02 1.54540000e+02 1.58880000e+02 1.63920000e+02 1.68300000e+02 1.72820000e+02 1.77600000e+02 1.81980000e+02 1.85880000e+02 1.90060000e+02 1.94420000e+02 1.99060000e+02 2.03480000e+02 2.07660000e+02 2.11900000e+02 2.16360000e+02 2.20600000e+02 2.25480000e+02 2.30300000e+02 2.35160000e+02 2.40080000e+02 2.44680000e+02 2.53340000e+02 2.56580000e+02 2.60180000e+02 2.64120000e+02 2.68120000e+02 2.72020000e+02 2.75920000e+02 2.80440000e+02 2.85060000e+02 2.90220000e+02 2.94380000e+02 2.98660000e+02 3.03700000e+02 3.09020000e+02 3.12620000e+02 3.16680000e+02 3.20840000e+02 3.25060000e+02 3.29700000e+02 3.33900000e+02 3.38520000e+02 3.48460000e+02 3.53020000e+02 3.58400000e+02 3.62280000e+02 3.66260000e+02 3.70400000e+02 3.75420000e+02 3.79980000e+02 3.89880000e+02 3.95060000e+02 3.99280000e+02 4.03700000e+02 4.08460000e+02 4.14020000e+02 4.18820000e+02 4.23100000e+02 4.31380000e+02 4.36160000e+02 4.40400000e+02 4.45320000e+02 4.49760000e+02 4.54460000e+02 4.64080000e+02 4.69060000e+02 4.73440000e+02 4.77560000e+02 4.81780000e+02 4.83840000e+02] pause stop [ 0.56 1.6 2.56 3.5 4.56 5.6 6.58 7.5 8.54 9.58 10.56 11.46 12.44 13.54 14.6 15.64 16.68 17.76 18.78 19.82 20.92 22.04 23.08 24.16 25.24 26.24 26.72 27.12 28. 28.6 29.96 30.98 32.14 33.22 34.22 35.28 36.32 38.18 39.02 39.82 40.78 41.84 42.98 44.14 45.22 46.38 47.52 48.56 49.58 50.54 51.4 52.24 53.08 53.92 54.74 55.94 56.98 58.12 59.22 60.26 61.3 62.34 63.34 64.32 65.36 66.44 67.48 68.46 69.46 70.4 71.24 72.08 73.3 74.46 75.54 76.64 77.76 78.8 79.84 80.92 81.96 82.98 84.04 85.08 86.08 87.12 88.18 89.2 90.22 91.3 92.36 93.36 94.22 95.12 96.2 97.26 98.38 99.6 100.82 102.22 103. 103.52 104.38 105.18 106. 106.86 108.06 109.12 110.2 111.3 112.32 113.28 114.24 115.2 116.08 116.96 117.88 118.86 119.8 120.74 121.78 122.8 123.76 124.74 125.8 126.8 127.78 128.8 129.82 130.8 131.82 132.82 133.86 134.84 135.88 136.96 137.98 139.02 140.12 141.22 142.28 143.38 144.48 145.58 146.62 147.7 148.86 149.98 151.06 152.22 153.38 154.48 155.52 156.64 157.76 158.82 159.88 161.1 162.3 163.44 164.56 165.72 166.86 167.96 168.98 170.18 171.36 172.54 173.72 174.96 176.2 177.38 178.46 179.58 180.72 181.8 182.76 184.08 185.34 186.48 187.72 188.92 190.02 191.06 192.18 193.34 194.44 195.52 196.66 197.8 198.88 199.94 201.08 202.26 203.36 204.46 205.62 206.76 207.88 209. 210.18 211.36 212.52 213.72 214.94 216.1 217.22 218.4 219.58 220.7 221.88 223.1 224.28 225.42 226.54 227.72 228.88 229.96 230.98 232.16 233.34 234.46 235.48 236.6 237.78 238.94 240.02 241.08 242.22 243.38 244.46 245.5 246.64 247.78 248.78 249.8 250.9 251.94 252.86 253.72 254.64 255.88 256.9 257.94 259.06 260.1 261. 262.06 263.16 264.14 265.06 266. 267. 267.92 268.76 269.6 270.6 271.58 272.52 273.44 274.46 275.5 276.48 277.5 278.58 279.66 280.7 281.78 282.9 284.02 285.1 286.22 287.36 288.5 289.58 290.58 291.6 292.72 293.84 294.96 296.2 297.42 298.62 299.76 300.96 302.14 303.24 304.32 305.46 306.66 307.82 308.94 310.08 311.18 312.2 313.16 314.46 315.74 316.96 318.2 319.42 320.56 321.64 322.8 323.94 325.04 326.14 327.28 328.38 329.46 330.5 331.68 332.84 333.96 335.04 336.2 337.34 338.44 339.46 340.64 341.8 342.92 343.96 345.08 346.18 347.22 348.2 349.1 350.26 351.44 352.54 353.56 354.7 355.84 356.9 357.78 358.64 359.52 360.58 361.68 362.74 363.82 364.94 366.04 367.08 368.12 369.24 370.34 371.44 372.66 373.86 375. 376.1 377.26 378.42 379.52 380.62 381.84 383.04 384.16 385.24 386.48 387.68 388.8 389.86 390.9 392.22 393.48 394.68 395.78 396.88 397.88 398.74 399.62 400.98 402.3 403.56 404.76 406.02 407.22 408.34 409.42 410.58 411.72 412.84 413.94 414.98 416.24 417.44 418.6 419.68 420.88 422.06 423.16 424.28 425.46 426.6 427.66 428.68 429.72 430.76 431.88 433.16 434.32 435.28 436.22 437.18 438.38 439.56 440.66 441.76 442.92 444.04 445.1 446.1 447.22 448.38 449.46 450.48 451.56 452.64 453.68 454.66 455.62 456.78 457.92 459. 460.04 461.16 462.22 463.38 464.36 465.36 466.5 467.56 468.56 469.48 470.62 471.8 472.92 474.02 475.16 476.32 477.4 478.4 479.46 480.52 481.5 482.42 483.54] Estimating phase for respiration_info Estimating phase for cardiac_info [-278.61024793 -288.61024793 -297.61024793 ..., -104.61024793 -87.61024793 -122.61024793] Computing RVT from peaks [-188.58459138 -188.58459138 -174.14189767 ..., 1.72159523 1.72159523 1.72159523] [ 0 1 2 ..., 24197 24198 24199] [ 250 251 252 ..., 24447 24448 24449] [ 500 501 502 ..., 24697 24698 24699] [ 750 751 752 ..., 24947 24948 24949] [ 1000 1001 1002 ..., 25197 25198 25199] if ( 0 ) then echo ++ FINISHED EXECUTION ++ FINISHED EXECUTION COPY_AND_EXIT: if ( 0 && -d /data/APMULTI/APMULTI_TEST/apmulti_root.005/apmulti_demo/data_13_ssw/sub-005/ses-01 ) then exit 0