mkdir -p afni.rt
cd afni.rt

# ----------------------------------------------------------------------
# note the locations of extra info (up a level, since in afni.rt dir)

set apdir = ../../RT_input
set exdir = $apdir/RT_extras
if ( ! -d $apdir || ! -d $exdir ) then
   echo "** missing input dir"
   exit 1
endif

# ----------------------------------------------------------------------
# prepare RT environment

# setenv AFNI_REALTIME_Base_Image      2
setenv AFNI_REALTIME_Registration      3D:_realtime
setenv AFNI_REALTIME_Reg_Base_Mode     External_Dataset
setenv AFNI_REALTIME_External_Dataset  $exdir/vr_base+orig
setenv AFNI_REALTIME_Base_Image        0

setenv AFNI_REALTIME_Graph         Realtime
setenv AFNI_REALTIME_MP_HOST_PORT  localhost:53214
setenv AFNI_REALTIME_SEND_VER      YES
setenv AFNI_REALTIME_SHOW_TIMES    YES
setenv AFNI_REALTIME_Mask_Vals     ROIs_and_data

setenv AFNI_REALTIME_Verbose       Very
setenv AFNI_REALTIME_Mask_Dset     $exdir/Clust_mask+orig


# ----------------------------------------------------------------------
# run afni

afni -rt -no_detach