:orphan: .. _ahelp_3ddot_beta: ********** 3ddot_beta ********** .. contents:: :local: | .. code-block:: none Beta version of updating 3ddot. Right now, *only* doing eta2 tests, and only outputting a full matrix to a text file. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * + COMMAND: 3ddot_beta -input FILE -doeta2 \ {-mask MASK } -prefix PREFIX * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * + OUTPUT: 1) A single text file with the correlation-like matrix. If the input data set has N bricks, then the matrix will be NxN. + RUNNING: -input FILE :file with N bricks. -prefix PREFIX :output test file will be called PREFIX_eta2.dat. -doeta2 :right now, required switch (more tests might be present in the future, if demand calls for it). -mask MASK :can include a mask within which to take values. Otherwise, data should be masked already. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * + EXAMPLE: 3ddot_beta \ -input RSFC_MAPS_cat+orig \ -mask mask.nii.gz \ -doeta2 \ -prefix My_Matrix_File * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *