:orphan: .. _ahelp_@djunct_edgy_align_check: ************************ @djunct_edgy_align_check ************************ .. contents:: :local: | OVERVIEW ======== .. code-block:: none More helpful helpfile description coming (some day...) This is just a helper script for other things. written by PA Taylor, modelled heavily on RW Cox's '@snapshot_volreg' script # -------------------------------------------------------------------- COMMAND OPTIONS =============== .. code-block:: none -hview -help -ver -echo -ulay ULAY -olay OLAY -prefix PREFIX -box_focus_slices DSET_BFS -montgap MG -montcolor MC -cbar CBAR -blowup BUFAC -save_ftype FTYPE -set_dicom_xyz XX YY ZZ -ulay_range umin umax -ulay_range_nz umin umax -ulay_range_am umin umax -umin_fac UF -montx MX -monty MY -use_olay_grid INTERP -label_mode LM -sharpen_ulay_off -mask_olay_edges -no_cor -no_sag -no_axi -no_clean NOTES TO SELF ============= .. code-block:: none If using -box_focus_slices, don't use the AMASK_FOCUS_OLAY keyword, but instead repeat the name of the olay explicitly. This is because this program creates an edgified version of the olay, which gets passed into @chauffeur_afni, and then using the AMASK* functionality would try to 'automask' that dset, typically leaves no voxels and leads to an error. Repeating the name of the input olay leads to correct behavior. (Ask me how I discovered *this* tidbit of knowledge?)