:orphan: .. _ahelp_@toMNI_Qwarpar: ************** @toMNI_Qwarpar ************** .. contents:: :local: | .. code-block:: none ** This script is similar to @toMNI_Qwarp -- but it spawns ** ** jobs in parallel (on the same system). To use it, you ** ** must edit the script and set the 2 variables ** Script to take a collection of datasets and transform them to MNI space, then collectively re-transform them to produce a more refined average. This script is usually used AFTER running @toMNI_Awarp to do the affine alignments, and that script is run AFTER skull-stripping the original volumes. This script spawns jobs to run in parallel (on the same system). Before using it, copy it into the data directory, and edit it to set the 2 variables: set numcpu = TOTAL NUMBER OF CPUS TO USE set numjob = MAX NUMBER OF JOBS TO USE numcpu should not exceed the number of CPUs (cores) on the system; it is often simplest to set numjob to the same value as numcpu, so that 1 dataset is processed in 1 core, and numcpu jobs are run at a time. Usage: @toMNI_Qwarpar (... and then wait a long time) It should be run inside the directory created by @toMNI_Awarp, and