:orphan: .. _ahelp_fat_mvm_gridconv.py: ******************* fat_mvm_gridconv.py ******************* .. contents:: :local: | .. code-block:: none * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * ++ Jan, 2015. ++ Preprocess some 'old school' (=poorly formatted) *.grid files so that they can be fat_mvm_prep'ed for statistical modeling using 3dMVM. ++ written by PA Taylor. This program is designed to convert old 3dTrackID output *.grid files (which have no labels in '#'-started comments) into modern format. This program reads in individual or a set of old *.grid files, and outputs new ones in the same folder with '_MOD.grid' postfix (or an explicit output prefix can be entered using '--list_match'). This program now also applies to updating *.netcc files that have Pearson correlation ('CC') and Fisher Z-transform matrices ('FZ') but no labels in '#'-started comments in the modern format. The same output naming conventions/options as above apply. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * TO USE (from a terminal commandline): $ fat_mvm_gridconv.py { -m MATR_FILES | -l LIST } where: -m, --matr_in=MATR_FILES :one way of providing the set of matrix (*.grid) files- by searchable path. This can be a globbable entry in quotes containing wildcard characters, such as 'DIR1/*/*000.grid'. -l, --list_match=LIST :another way of inputting the matrix (*.grid) files-- by explicit path in a text file. The LIST text file must contain at least one column: col 1: path to subject matrix file. with an optional second column: col 2: output file names. (NB: columns must be the same length.) The first line can be '#'-commented, which is not read for filenames). If no second column is given, then the default '_MOD.grid' postfix is applied. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Example: $ fat_mvm_gridconv.py --matr_in='./GROUP/*/*_000.grid' or, equivalently: $ fat_mvm_gridconv.py -m './GROUP/*/*_000.grid' -----------------------------------------------------------------------------