:orphan:

.. _ahelp_apqc_make_tcsh.py:

*****************
apqc_make_tcsh.py
*****************

.. contents:: :local:


| 

.. code-block:: none

    
    
    This program creates the single subject (ss) HTML review script
    '@ss_review_html', which itself generates images and text that form
    the afni_proc.py quality control (APQC) HTML.
    
    It is typically run by the afni_proc.py (AP) proc* script itself.
    
    Options:
    
    -uvar_json  UJ    :(req) UJ is a text file of uvars ("user variables")
                       created by gen_ss_review.py that catalogues important
                       files in the results directory, for the APQC.
    
    -subj_dir   SD    :(req) location of AP results directory (often '.', as
                       this program is often run from within the AP results 
                       directory).
    
    -review_style RS  :(opt) the 'style' of the APQC HTML output HTML.  Allowed
                       keywords are:
                           {none, basic, pythonic}
                       + Using 'pythonic' is the recommended way to go: the
                       1D images are the clearest and most informative.
                       It means you need the Python module Matplotlib
                       (v>=2.2) installed, which should be a light dependency.
                       + Using 'basic' means that no Matplotlib will be
                       used, just 1dplot, and the images will be more,
                       well, basic-looking.
                       + Using 'none' means no APQC HTML is generated (boooooo).
    
    -mot_grayplot_off :(opt) turn off the grayplot generation.  This
                       option was created for a specific case of a user who had
                       a huuuge dataset and the grayplot took annoyingly long
                       to estimate.  Not recommended to use, generally.