1.1. The Authoritative HowTo for Installing AFNI

• 1.1.1. The Indispensable Overview
  • Preamble Ramble
  • Setting up systems
  • Optional reading: technical notes around installing
• 1.1.2. Ubuntu Linux (15.10 and earlier): The essential system setup
  • What to do?
  • Install prerequisite packages
  • Make “tcsh” default shell (optional/recommended)
  • Install AFNI binaries
  • Reboot
  • Install R
  • Make AFNI/SUMA profiles
  • Prepare for Bootcamp
  • Evaluate setup/system (important!)
  • Niceify terminal (optional, but goood)
  • Keep up-to-date (remember!)
• 1.1.3. Ubuntu Linux (16.04 and some higher): The essential system setup
  • Install prerequisite packages
  • Make “tcsh” default shell (optional/recommended)
  • Install AFNI binaries
  • Reboot
  • Install R
  • Make AFNI/SUMA profiles
  • Prepare for Bootcamp
  • Evaluate setup/system (important!)
  • Niceify terminal (optional, but goood)
  • Keep up-to-date (remember!)
• 1.1.4. Fedora and Red Hat Linux: The essential system setup
  • What to do?
  • Install prerequisite packages
  • Make “tcsh” default shell (optional/recommended)
  • Install AFNI binaries
  • Reboot
  • Install R
  • Make AFNI/SUMA profiles
  • Prepare for Bootcamp
  • Evaluate setup/system (important!)
  • Niceify terminal (optional, but goood)
  • Keep up-to-date (remember!)
• 1.1.5. Mac OS: The essential system setup
  • What to do?
  • Setup terminal
  • Install Xcode and XQuartz
  • Install AFNI binaries
  • Reboot
  • Install R
  • Make AFNI/SUMA profiles
  • Prepare for Bootcamp
  • Evaluate setup/system (important!)
  • Niceify terminal (optional, but goood)
  • Keep up-to-date (remember!)
  • Install PyQt4, via JDK and fink (optional)
• 1.1.6. macOS: The App-based system setup
  • Welcome to the Jungle
  • Take the File and Run
  • Break It Down Again
  • Prepare for Bootcamp
  • Evaluate setup/system (important!)
  • Niceify terminal (optional, but goood)
  • Keep up-to-date (remember!)
• 1.1.7. Windows 10 (Windows Subsystem for Linux (WSL)): The essential system setup
  • Install prerequisite: Getting Linux
  • Install prerequisite: VcXsrv Windows X Server
  • Install prerequisite: AFNI and package dependencies
  • Useful setup tips (optional, but recommended)
  • Make AFNI/SUMA profiles
  • Prepare for Bootcamp
  • Evaluate setup/system (important!)
  • Niceify terminal (optional, but goood)
  • Keep up-to-date (remember!)
• 1.1.8. *old* Windows 10 beta (‘Bash on Ubuntu’): The essential system setup
  • Important notice
  • Notes
  • Install prerequisite: “Bash on Windows”
  • Install prerequisite: Xming X Server for Windows
  • Install prerequisite: AFNI and package dependencies
  • Useful setup tips (optional, but recommended)
  • Make AFNI/SUMA profiles
  • Prepare for Bootcamp
  • Evaluate setup/system (important!)
  • Niceify terminal (optional, but goood)
  • Keep up-to-date (remember!)
• 1.1.9. FAQ and debugging common error messages