AFNI HISTORY

The levels of importance go from 1 to 5, with meanings:
       1 - users would not care
       2 - of little importance, though some users might care
       3 - fairly important
       4 - a big change or new program
       5 - IMPORTANT: we expect users to know

generated via the command : afni_history -html -reverse -min_level 3 -past_years 2 

  ----  log of AFNI updates (most recent first)  ----

29 Mar 2024, RC Reynolds, ap_run_simple_rest_me.tcsh, level 3 (MAJOR), type 1 (NEW_PROG)
    run a quick afni_proc.py resting state analysis for QC on multi-echo data


18 Mar 2024, RC Reynolds, afni_proc.py, level 3 (MAJOR), type 6 (ENHANCE)
    auto-include APQC_atlas for compute_tsnr_stats, if appropriate

    And add -regress_compute_auto_tsnr_stats.


15 Feb 2024, RC Reynolds, compute_ROI_stats.tcsh, level 3 (MAJOR), type 1 (NEW_PROG)
    compute per-ROI region statstics over a given dataset

    It is a little like 3dROIstats, but with needs specific to afni_proc.py.


19 Feb 2023, RC Reynolds, build_afni.py, level 3 (MAJOR), type 1 (NEW_PROG)
    compile AFNI

      - download from github
      - download AFNI atlases
      - compile
      - suggest rsync (will apply with some options, later)


06 Jan 2023, P Taylor, apqc_make_tcsh.py, level 3 (MAJOR), type 2 (NEW_OPT)
    Add '-vstat_list' opt, so user can enter label bases for vstat in APQC.

    HTML still has up to 5 automatically chosen vols by def in vstat.


23 Dec 2022, RC Reynolds, init_user_dotfiles.py, level 3 (MAJOR), type 1 (NEW_PROG)
    evaluate or initialize dot/RC files for running AFNI

    From the perspective of:
        i) adding a directory (ABIN?) to the PATH
       ii) sourcing the apsearch all_progs.COMP file (per shell)
      iii) (for macs) adding flat_namespace to DYLD_LIBRARY_PATH


14 Nov 2022, RC Reynolds, find_variance_lines.tcsh, level 3 (MAJOR), type 1 (NEW_PROG)
    (w PT/DG) look for columns of high temporal variance in time series

    Will be a recommended QC option in afni_proc.py.


05 Oct 2022, P Taylor, apqc_make_tcsh.py, level 3 (MAJOR), type 6 (ENHANCE)
    Output a run_instacorr_errts.tcsh script in the results directory.

    Very useful for data QC. Use it.  Quick now, here, now, always...


22 Apr 2022, RC Reynolds, Dimon, level 3 (MAJOR), type 2 (NEW_OPT)
    add -sort_method cases rin and geme_rin