AFNI program: @T1mask
Output of -help
Usage: @T1mask <-T1 T1vol>
Crete
You can also get a decent result even without the PD volume
-T1 T1vol: The T1 volume
-odir ODIR: Directory where output gets dumped.
Default is T1mask/
ODIR will contain multiple volumes with the one
of most interest being T1.hull.mask.m+orig
You can set ODIR to ./
Script will reuse existing intermediate volumes
-hullmask VOL: Create mask using the convex hull of the brightest.
VOL liters worth of voxels. 0.75 is the default
You might want to reduce VOL to 0.55 or 0.35 if you
have strong ghosting artifacts.
Output is T1.hull.mask.m+orig
-automask: Also create a mask with 3dAutomask
Output is T1.amask+orig
-echo: Set echo
-help: this message
Global Help Options:
--------------------
-h_web: Open webpage with help for this program
-hweb: Same as -h_web
-h_view: Open -help output in a GUI editor
-hview: Same as -hview
-all_opts: List all of the options for this script
-h_find WORD: Search for lines containing WORD in -help
output. Seach is approximate.
This page auto-generated on
Fri Oct 19 17:22:14 EDT 2018