AFNI file: AFNI.Xdefaults
!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
!! How to set up AFNI defaults using X11:
!! a) put lines like this in your .Xdefaults file in your home directory;
!! b) edit to fit your needs
!! c) log out and log back in (or use the command "xrdb -merge .Xdefaults")
!!
!! The values in this file are the values "hard-wired" into AFNI, and
!! so you only need to put into the .Xdefaults file those values you
!! wish to change.
!!
!! The resources up to and including AFNI*gamma also apply
!! to the program TO3D -- all those after are specific to AFNI.
!! font to use in most widgets
AFNI*fontList: 9x15bold=charset1
!! background color in most widgets
AFNI*background: gray40
AFNI*borderColor: gray40
!! background color in most popup and pulldown menu panes
!! (this choice gives some contrast with the gray40 overall background)
AFNI*menu*background: black
!! foreground color in most widgets
AFNI*foreground: yellow
!! color in the "trough" of the slider controls (images and threshold)
AFNI*troughColor: green
!! color for quit and other "hot" buttons
AFNI*hotcolor: red3
!! gray/color levels used for image display
!! (overridden by the -ncol option)
AFNI*ncolors: 100
!! correction for screen
!! (overridden by the -gamma option)
AFNI*gamma: 1.0
!! This option is actually only for TO3D;
!! it specifies the initial value to put in the
!! field-of-view widget (in mm).
AFNI*init_fov: 240.0
!!****
!!**** Resources below here apply only to AFNI, not to TO3D
!!****
!! auto-purge datasets from memory? (True or False)
!! (overridden by the -purge option)
AFNI*purge: False
!! Whether to use the "big" Talairach box, which
!! extends 10 mm more inferior than the AFNI 1.0x
!! to accommodate the cerebellum.
AFNI*tlrc_big: True
!! Whether or not to use periodic montage layouts.
AFNI*montage_periodic: True
!! Use these to set the colors used in the BHelp popup
!! AFNI*help*background: #ffffaa
!! AFNI*help*foreground: black
!! Set this to False to turn off the window manager
!! borders on the BHelp popup
AFNI*help*helpborder: True
!! number of slices to scroll in image viewers when
!! Shift key is pressed along with arrowpad button
AFNI*bigscroll: 5
!! default resampling modes (from the set NN, Li, Cu, Bk)
!! and voxel dimension (always cubical, in mm)
AFNI*resam_anat: Li
AFNI*resam_func: NN
AFNI*resam_vox: 1.0
!! Whether to pop a list chooser down on double click or not
!! "Set" means double click is the same as the Set button
!! (and will pop the chooser down)
!! "Apply" means double click is the same as the Apply button
!! (and will keep the chooser up)
!!
AFNI*chooser_doubleclick: Set
!! For scrolling list choosers (the "Switch" buttons),
!! defines the max number of entries to display in
!! a window before attaching scrollbars.
!! (N.B.: if the number of entries to choose between
!! is only a few more than this, then the
!! window will be expanded and no scrollbars used.)
AFNI*chooser_listmax: 10
!! Initial dimensions of graphing region, in pixels
AFNI*graph_width: 512
AFNI*graph_height: 512
!! Initial number of points to ignore in graphs and FIMs
!! (overridden by the -ignore option)
AFNI*fim_ignore: 0
!! number of overlay colors to allocate: from 2 to 99
AFNI*ncolovr: 20
!! Definitions of colors (RGB or color database strings).
!! Note that color number 0 means "none" and can't be redefined.
!! These color indices (1 .. ncolovr) can be used in various places below.
!! Note that if you just want to add new colors, you can
!! a) set AFNI*ncolovr to a larger value
!! b) supply "ovdef" and "ovlab" values for each new color index
!! from 21 .. ncolovr
AFNI*ovdef01: #ffff00
AFNI*ovdef02: #ffcc00
AFNI*ovdef03: #ff9900
AFNI*ovdef04: #ff6900
AFNI*ovdef05: #ff4400
AFNI*ovdef06: #ff0000
AFNI*ovdef07: #0000ff
AFNI*ovdef08: #0044ff
AFNI*ovdef09: #0069ff
AFNI*ovdef10: #0099ff
AFNI*ovdef11: #00ccff
AFNI*ovdef12: #00ffff
AFNI*ovdef13: green
AFNI*ovdef14: limegreen
AFNI*ovdef15: violet
AFNI*ovdef16: hotpink
AFNI*ovdef17: white
AFNI*ovdef18: #dddddd
AFNI*ovdef19: #bbbbbb
AFNI*ovdef20: black
!! Labels used for colors in "choosers"
!! (only 1st 9 characters are used).
AFNI*ovlab01: yellow
AFNI*ovlab02: yell-oran
AFNI*ovlab03: oran-yell
AFNI*ovlab04: orange
AFNI*ovlab05: oran-red
AFNI*ovlab06: red
AFNI*ovlab07: dk-blue
AFNI*ovlab08: blue
AFNI*ovlab09: lt-blue1
AFNI*ovlab10: lt-blue2
AFNI*ovlab11: blue-cyan
AFNI*ovlab12: cyan
AFNI*ovlab13: green
AFNI*ovlab14: limegreen
AFNI*ovlab15: violet
AFNI*ovlab16: hotpink
AFNI*ovlab17: white
AFNI*ovlab18: gry-dd
AFNI*ovlab19: gry-bb
AFNI*ovlab20: black
!! index of color used for crosshairs at startup
AFNI*ovcrosshair: 13
!! color used for primary marker at startup
AFNI*ovmarksprimary: 17
!! color used for secondary markers at startup
AFNI*ovmarkssecondary: 14
!! pixel width for markers at startup
AFNI*markssize: 8
!! pixel gap for markers at startup
AFNI*marksgap: 3
!! pixel gap for crosshairs at startup
AFNI*crosshairgap: 5
!! Used to set default colors for graph windows.
!! The values are positive color indices, or
!! can be -1 == brightest color in the overlay list
!! -2 == darkest color
!! -3 == reddest color
!! -4 == greenest color
!! -5 == bluest color
!! boxes == Outlines drawn around each graph
!! backg == Background
!! grid == Uniformly spaced vertical lines in each graph
!! text == Text (except for value under current time index)
!! data == Data timeseries graph
!! ideal == Ideal timeseries graph
!! (also used to indicate the current time index)
!! ort == Ort timeseries graph
!! ignore == Used to indicate which points are ignored for FIM
!! dplot == Double plot overlay color
AFNI*graph_boxes_color: -2
AFNI*graph_backg_color: -1
AFNI*graph_grid_color: 1
AFNI*graph_text_color: -2
AFNI*graph_data_color: -2
AFNI*graph_ideal_color: -3
AFNI*graph_ort_color: -4
AFNI*graph_ignore_color: -5
AFNI*graph_dplot_color: -3
!! Used to set the whether certain types of
!! lines in the graph windows are thick or
!! not. Use 0 to indicate "thin" and use
!! "1" to indicate "thick".
AFNI*graph_boxes_thick: 0
AFNI*graph_grid_thick: 0
AFNI*graph_data_thick: 0
AFNI*graph_ideal_thick: 0
AFNI*graph_ort_thick: 0
AFNI*graph_dplot_thick: 0
!! Used to set the gap between sub-graphs
AFNI*graph_ggap: 0
!! Used to set the font for drawing text into
!! graph windows. The default font is chosen
!! from a list "tfont_hopefuls" in the source file
!! display.h. You can find out what fonts are
!! available on your system by using the command
!! "xlsfonts | more"
AFNI*gfont: 7x14
!! Used to set the default fim polort order
AFNI*fim_polort: 1
!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
!! font to use in pbar widgets
AFNI*pbar*fontList: 7x13bold=charset1
!! A smaller font for pbar
!!AFNI*pbar*fontList: 6x10=charset1
!! start pbar in positive mode (True or False)
AFNI*pbar_posfunc: False
!! hide process of changing pbar panes (True or False)
AFNI*pbar_hide: False
!! initial number of panes in the pbar (pos and sgn modes)
AFNI*pbar_pos_pane_count: 8
AFNI*pbar_sgn_pane_count: 9
!! Set the color "pbar" initial thresholds and colors
!!
!! _pos --> positive only pbar (range from 1.0 to 0.0)
!! _sgn --> signed pbar (range from 1.0 to -1.0)
!!
!! _panexx --> data for case with xx panes (from 02 to 10)
!!
!! _thryy --> yy'th threshold: 00 is top (always 1.0),
!! 01 is next to top, up to yy = xx
!! (always 0.0 for pos_, -1.0 for sgn_)
!!
!! _ovyy --> yy'th color index: 00 is top pane, up to yy = xx-1
!!
!! The thr values must decrease monotonically with yy.
!! The ov values must be color indices from the ovdef table
!! (including color 0 --> no color).
!!
!! N.B.: If you supply values for a particular xx, you must
!! supply ALL the values (_thr and _ov), or AFNI will
!! ignore these values and use its built in defaults
!! for that number of panes.
AFNI*pbar_pos_pane02_thr00: 1.0
AFNI*pbar_pos_pane02_thr01: 0.5
AFNI*pbar_pos_pane02_thr02: 0.0
AFNI*pbar_pos_pane02_ov00: 1
AFNI*pbar_pos_pane02_ov01: 0
AFNI*pbar_pos_pane03_thr00: 1.0
AFNI*pbar_pos_pane03_thr01: 0.67
AFNI*pbar_pos_pane03_thr02: 0.33
AFNI*pbar_pos_pane03_thr03: 0.0
AFNI*pbar_pos_pane03_ov00: 1
AFNI*pbar_pos_pane03_ov01: 6
AFNI*pbar_pos_pane03_ov02: 0
AFNI*pbar_pos_pane04_thr00: 1.0
AFNI*pbar_pos_pane04_thr01: 0.75
AFNI*pbar_pos_pane04_thr02: 0.50
AFNI*pbar_pos_pane04_thr03: 0.25
AFNI*pbar_pos_pane04_thr04: 0.00
AFNI*pbar_pos_pane04_ov00: 1
AFNI*pbar_pos_pane04_ov01: 4
AFNI*pbar_pos_pane04_ov02: 6
AFNI*pbar_pos_pane04_ov03: 0
AFNI*pbar_pos_pane05_thr00: 1.0
AFNI*pbar_pos_pane05_thr01: 0.80
AFNI*pbar_pos_pane05_thr02: 0.60
AFNI*pbar_pos_pane05_thr03: 0.40
AFNI*pbar_pos_pane05_thr04: 0.20
AFNI*pbar_pos_pane05_thr05: 0.00
AFNI*pbar_pos_pane05_ov00: 1
AFNI*pbar_pos_pane05_ov01: 3
AFNI*pbar_pos_pane05_ov02: 5
AFNI*pbar_pos_pane05_ov03: 6
AFNI*pbar_pos_pane05_ov04: 0
AFNI*pbar_pos_pane06_thr00: 1.0
AFNI*pbar_pos_pane06_thr01: 0.84
AFNI*pbar_pos_pane06_thr02: 0.67
AFNI*pbar_pos_pane06_thr03: 0.50
AFNI*pbar_pos_pane06_thr04: 0.33
AFNI*pbar_pos_pane06_thr05: 0.16
AFNI*pbar_pos_pane06_thr06: 0.00
AFNI*pbar_pos_pane06_ov00: 1
AFNI*pbar_pos_pane06_ov01: 2
AFNI*pbar_pos_pane06_ov02: 3
AFNI*pbar_pos_pane06_ov03: 5
AFNI*pbar_pos_pane06_ov04: 6
AFNI*pbar_pos_pane06_ov05: 0
AFNI*pbar_pos_pane07_thr00: 1.0
AFNI*pbar_pos_pane07_thr01: 0.90
AFNI*pbar_pos_pane07_thr02: 0.75
AFNI*pbar_pos_pane07_thr03: 0.60
AFNI*pbar_pos_pane07_thr04: 0.45
AFNI*pbar_pos_pane07_thr05: 0.30
AFNI*pbar_pos_pane07_thr06: 0.15
AFNI*pbar_pos_pane07_thr07: 0.00
AFNI*pbar_pos_pane07_ov00: 1
AFNI*pbar_pos_pane07_ov01: 2
AFNI*pbar_pos_pane07_ov02: 3
AFNI*pbar_pos_pane07_ov03: 4
AFNI*pbar_pos_pane07_ov04: 5
AFNI*pbar_pos_pane07_ov05: 6
AFNI*pbar_pos_pane07_ov06: 0
AFNI*pbar_pos_pane08_thr00: 1.0
AFNI*pbar_pos_pane08_thr01: 0.80
AFNI*pbar_pos_pane08_thr02: 0.70
AFNI*pbar_pos_pane08_thr03: 0.60
AFNI*pbar_pos_pane08_thr04: 0.50
AFNI*pbar_pos_pane08_thr05: 0.40
AFNI*pbar_pos_pane08_thr06: 0.30
AFNI*pbar_pos_pane08_thr07: 0.15
AFNI*pbar_pos_pane08_thr08: 0.00
AFNI*pbar_pos_pane08_ov00: 1
AFNI*pbar_pos_pane08_ov01: 2
AFNI*pbar_pos_pane08_ov02: 3
AFNI*pbar_pos_pane08_ov03: 4
AFNI*pbar_pos_pane08_ov04: 5
AFNI*pbar_pos_pane08_ov05: 6
AFNI*pbar_pos_pane08_ov06: 16
AFNI*pbar_pos_pane08_ov07: 0
AFNI*pbar_pos_pane09_thr00: 1.0
AFNI*pbar_pos_pane09_thr01: 0.90
AFNI*pbar_pos_pane09_thr02: 0.80
AFNI*pbar_pos_pane09_thr03: 0.70
AFNI*pbar_pos_pane09_thr04: 0.60
AFNI*pbar_pos_pane09_thr05: 0.50
AFNI*pbar_pos_pane09_thr06: 0.25
AFNI*pbar_pos_pane09_thr07: 0.15
AFNI*pbar_pos_pane09_thr08: 0.05
AFNI*pbar_pos_pane09_thr09: 0.00
AFNI*pbar_pos_pane09_ov00: 1
AFNI*pbar_pos_pane09_ov01: 2
AFNI*pbar_pos_pane09_ov02: 3
AFNI*pbar_pos_pane09_ov03: 4
AFNI*pbar_pos_pane09_ov04: 5
AFNI*pbar_pos_pane09_ov05: 6
AFNI*pbar_pos_pane09_ov06: 16
AFNI*pbar_pos_pane09_ov07: 15
AFNI*pbar_pos_pane09_ov08: 0
AFNI*pbar_pos_pane10_thr00: 1.0
AFNI*pbar_pos_pane10_thr01: 0.90
AFNI*pbar_pos_pane10_thr02: 0.80
AFNI*pbar_pos_pane10_thr03: 0.70
AFNI*pbar_pos_pane10_thr04: 0.60
AFNI*pbar_pos_pane10_thr05: 0.50
AFNI*pbar_pos_pane10_thr06: 0.40
AFNI*pbar_pos_pane10_thr07: 0.30
AFNI*pbar_pos_pane10_thr08: 0.20
AFNI*pbar_pos_pane10_thr09: 0.10
AFNI*pbar_pos_pane10_thr10: 0.00
AFNI*pbar_pos_pane10_ov00: 1
AFNI*pbar_pos_pane10_ov01: 2
AFNI*pbar_pos_pane10_ov02: 3
AFNI*pbar_pos_pane10_ov03: 4
AFNI*pbar_pos_pane10_ov04: 5
AFNI*pbar_pos_pane10_ov05: 6
AFNI*pbar_pos_pane10_ov06: 16
AFNI*pbar_pos_pane10_ov07: 15
AFNI*pbar_pos_pane10_ov08: 7
AFNI*pbar_pos_pane10_ov09: 0
AFNI*pbar_sgn_pane02_thr00: 1.0
AFNI*pbar_sgn_pane02_thr01: 0.0
AFNI*pbar_sgn_pane02_thr02: -1.0
AFNI*pbar_sgn_pane02_ov00: 1
AFNI*pbar_sgn_pane02_ov01: 11
AFNI*pbar_sgn_pane03_thr00: 1.0
AFNI*pbar_sgn_pane03_thr01: 0.05
AFNI*pbar_sgn_pane03_thr02: -0.05
AFNI*pbar_sgn_pane03_thr03: -1.0
AFNI*pbar_sgn_pane03_ov00: 1
AFNI*pbar_sgn_pane03_ov01: 0
AFNI*pbar_sgn_pane03_ov02: 11
AFNI*pbar_sgn_pane04_thr00: 1.0
AFNI*pbar_sgn_pane04_thr01: 0.50
AFNI*pbar_sgn_pane04_thr02: 0.0
AFNI*pbar_sgn_pane04_thr03: -0.50
AFNI*pbar_sgn_pane04_thr04: -1.0
AFNI*pbar_sgn_pane04_ov00: 1
AFNI*pbar_sgn_pane04_ov01: 4
AFNI*pbar_sgn_pane04_ov02: 8
AFNI*pbar_sgn_pane04_ov03: 11
AFNI*pbar_sgn_pane05_thr00: 1.0
AFNI*pbar_sgn_pane05_thr01: 0.50
AFNI*pbar_sgn_pane05_thr02: 0.05
AFNI*pbar_sgn_pane05_thr03: -0.05
AFNI*pbar_sgn_pane05_thr04: -0.50
AFNI*pbar_sgn_pane05_thr05: -1.0
AFNI*pbar_sgn_pane05_ov00: 1
AFNI*pbar_sgn_pane05_ov01: 4
AFNI*pbar_sgn_pane05_ov02: 0
AFNI*pbar_sgn_pane05_ov03: 8
AFNI*pbar_sgn_pane05_ov04: 11
AFNI*pbar_sgn_pane06_thr00: 1.0
AFNI*pbar_sgn_pane06_thr01: 0.66
AFNI*pbar_sgn_pane06_thr02: 0.33
AFNI*pbar_sgn_pane06_thr03: 0.00
AFNI*pbar_sgn_pane06_thr04: -0.33
AFNI*pbar_sgn_pane06_thr05: -0.66
AFNI*pbar_sgn_pane06_thr06: -1.0
AFNI*pbar_sgn_pane06_ov00: 1
AFNI*pbar_sgn_pane06_ov01: 3
AFNI*pbar_sgn_pane06_ov02: 5
AFNI*pbar_sgn_pane06_ov03: 7
AFNI*pbar_sgn_pane06_ov04: 9
AFNI*pbar_sgn_pane06_ov05: 11
AFNI*pbar_sgn_pane07_thr00: 1.0
AFNI*pbar_sgn_pane07_thr01: 0.66
AFNI*pbar_sgn_pane07_thr02: 0.33
AFNI*pbar_sgn_pane07_thr03: 0.05
AFNI*pbar_sgn_pane07_thr04: -0.05
AFNI*pbar_sgn_pane07_thr05: -0.33
AFNI*pbar_sgn_pane07_thr06: -0.66
AFNI*pbar_sgn_pane07_thr07: -1.0
AFNI*pbar_sgn_pane07_ov00: 1
AFNI*pbar_sgn_pane07_ov01: 3
AFNI*pbar_sgn_pane07_ov02: 5
AFNI*pbar_sgn_pane07_ov03: 0
AFNI*pbar_sgn_pane07_ov04: 7
AFNI*pbar_sgn_pane07_ov05: 9
AFNI*pbar_sgn_pane07_ov06: 11
AFNI*pbar_sgn_pane08_thr00: 1.0
AFNI*pbar_sgn_pane08_thr01: 0.75
AFNI*pbar_sgn_pane08_thr02: 0.50
AFNI*pbar_sgn_pane08_thr03: 0.25
AFNI*pbar_sgn_pane08_thr04: 0.00
AFNI*pbar_sgn_pane08_thr05: -0.25
AFNI*pbar_sgn_pane08_thr06: -0.50
AFNI*pbar_sgn_pane08_thr07: -0.75
AFNI*pbar_sgn_pane08_thr08: -1.00
AFNI*pbar_sgn_pane08_ov00: 1
AFNI*pbar_sgn_pane08_ov01: 2
AFNI*pbar_sgn_pane08_ov02: 4
AFNI*pbar_sgn_pane08_ov03: 5
AFNI*pbar_sgn_pane08_ov04: 8
AFNI*pbar_sgn_pane08_ov05: 9
AFNI*pbar_sgn_pane08_ov06: 10
AFNI*pbar_sgn_pane08_ov07: 11
AFNI*pbar_sgn_pane09_thr00: 1.0
AFNI*pbar_sgn_pane09_thr01: 0.75
AFNI*pbar_sgn_pane09_thr02: 0.50
AFNI*pbar_sgn_pane09_thr03: 0.25
AFNI*pbar_sgn_pane09_thr04: 0.05
AFNI*pbar_sgn_pane09_thr05: -0.05
AFNI*pbar_sgn_pane09_thr06: -0.25
AFNI*pbar_sgn_pane09_thr07: -0.50
AFNI*pbar_sgn_pane09_thr08: -0.75
AFNI*pbar_sgn_pane09_thr09: -1.00
AFNI*pbar_sgn_pane09_ov00: 1
AFNI*pbar_sgn_pane09_ov01: 2
AFNI*pbar_sgn_pane09_ov02: 4
AFNI*pbar_sgn_pane09_ov03: 5
AFNI*pbar_sgn_pane09_ov04: 0
AFNI*pbar_sgn_pane09_ov05: 8
AFNI*pbar_sgn_pane09_ov06: 9
AFNI*pbar_sgn_pane09_ov07: 10
AFNI*pbar_sgn_pane09_ov08: 11
AFNI*pbar_sgn_pane10_thr00: 1.0
AFNI*pbar_sgn_pane10_thr01: 0.80
AFNI*pbar_sgn_pane10_thr02: 0.60
AFNI*pbar_sgn_pane10_thr03: 0.40
AFNI*pbar_sgn_pane10_thr04: 0.20
AFNI*pbar_sgn_pane10_thr05: 0.00
AFNI*pbar_sgn_pane10_thr06: -0.20
AFNI*pbar_sgn_pane10_thr07: -0.40
AFNI*pbar_sgn_pane10_thr08: -0.60
AFNI*pbar_sgn_pane10_thr09: -0.80
AFNI*pbar_sgn_pane10_thr10: -1.00
AFNI*pbar_sgn_pane10_ov00: 1
AFNI*pbar_sgn_pane10_ov01: 2
AFNI*pbar_sgn_pane10_ov02: 3
AFNI*pbar_sgn_pane10_ov03: 4
AFNI*pbar_sgn_pane10_ov04: 5
AFNI*pbar_sgn_pane10_ov05: 7
AFNI*pbar_sgn_pane10_ov06: 8
AFNI*pbar_sgn_pane10_ov07: 9
AFNI*pbar_sgn_pane10_ov08: 10
AFNI*pbar_sgn_pane10_ov09: 11
!! End of MCW AFNI X11 Resources
!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
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Tue Dec 17 06:56:54 PM EST 2024