AFNI program: adjunct_tort_read_dp_align.py
Output of -help
This program is just meant to be used via: adjunct_tort_plot_mot.
Please see that program for help usage. It extracts the 3 translation
(in mm) and 3 rotation (in deg) parameters estimated by TORTOISE's
DIFF_PREP tool during DWI processing.
auth: PA Taylor
If you really, really need to use this program separately (why? you
will miss out on the *pictures*!), then we will note that you can run
this program with precisely two arguments, as:
IN_FILE = *_transformations.txt file output by TORTOISE's DIFF_PREP.
OUT_FILE = a '1D' file, in AFNI-ese. Basically, a text file with 6
columns and with the same number of columns as input
DWIs. The columns represent:
Column #0 : del x (for axial data, RL)
Column #1 : del y (for axial data, AP)
Column #2 : del z (for axial data, IS)
Column #3 : Rx
Column #4 : Ry
Column #5 : Rz
This program (and its partner-in-crime, adjunct_tort_plot_mot) have
been checked with TORTOISE versions 3.1* - 3.2. Please contact the
TORTOISE group if you have any doubts/questions about the input file
format (you can cc us AFNI folks, too).
This page auto-generated on
Wed Jul 28 19:40:17 EDT 2021