AFNI program: uber_ttest.py

Output of -help


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uber_ttest.py      - GUI for group ttest

        usage:  uber_ttest.py

---

This help describes only the command line options to this program, which
enables one to:

        - initialize user variables (for GUI or command line)
        - initialize control variables (for GUI or command line)
        - pass PyQt4 options directly to the GUI
        - run without the GUI

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Examples:

   GUI examples:

      uber_ttest.py
      uber_ttest.py -qt_opts -style=motif

   Informational examples:

      uber_ttest.py -help
      uber_ttest.py -help_gui
      uber_ttest.py -hist
      uber_ttest.py -show_valid_opts
      uber_ttest.py -ver

   Non-GUI examples (all have -no_gui):

      uber_ttest.py -no_gui -print_script               \
         -dsets_A $ddir/OLSQ.*.HEAD

      uber_ttest.py -no_gui -save_script cmd.ttest      \
        -mask mask+tlrc                                 \
        -set_name_A vrel                                \
        -set_name_B arel                                \
        -dsets_A REML.*.HEAD                            \
        -dsets_B REML.*.HEAD                            \
        -beta_A 0                                       \
        -beta_B 2                                       \
        -results_dir ''

      Note that the 3dMEMA command should have t-stat indices as well.

      uber_ttest.py -no_gui -save_script cmd.MEMA       \
        -program 3dMEMA                                 \
        -mask mask+tlrc                                 \
        -set_name_A vrel                                \
        -set_name_B arel                                \
        -dsets_A REML.*.HEAD                            \
        -dsets_B REML.*.HEAD                            \
        -beta_A 0 -tstat_A 1                            \
        -beta_B 2 -tstat_B 3                            \
        -results_dir ''

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- R Reynolds  Aug, 2011
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