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¥Using Imon to assemble the EPI 3D+time datasets
Hcd
../EPI_manyruns Þ change directory to get at GE subdirectories containing images
Hls Þ to view the GE subdirectories containing 4 runs worth
of I.* files
åDirectories are numbered in
multiples of 20 (default naming system used by the GE scanner): 001/ 021/ 041/ 061/. . .
201/ 221/
HCommand line:
Imon
-start_dir 001 -GERT_Reco2 -quit
å-start_dir specifies the starting directory
where Imon will begin monitoring the
images. In this example, our start
directory is 001/
å-GERT_Reco2 will create a script called ÔGERT_Reco2Õ, similar to the one that program Ifile creates (for more info on Ifile, type Ifile -help).
íThe GERT_Reco2 script may be run to create the AFNI datasets corresponding to
the I.* files
å-quit will terminate Imon, after all image files have been
examined,
íIf -quit is not used, the program will forever wait for more
images, until <ctrl-c> is used to terminate the
program
HFor a full list of Imon options, type Imon -help
