PowerPoint Presentation

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•ls EPI_manyruns Þ to view the newly created GERT_Reco2 script

HThis script contains the commands that will automatically create bricks from the complete scans and store them in a newly created subdirectory called afni/

HTo run the script, type ./GERT_Reco2

•

•cd afni Þ to get at datasets

•ls Þ to view the AFNI 3D+time datasets:

Outbrick_r1+orig.HEAD Outbrick_r1+orig.BRIK

Outbrick_r2+orig.HEAD Outbrick_r2+orig.BRIK

Outbrick_r3+orig.HEAD Outbrick_r3+orig.BRIK

Outbrick_r4+orig.HEAD Outbrick_r4+orig.BRIK