¥Using Imon to assemble the EPI 3D+time datasets
Hcd ../EPI_manyruns Þ change directory to get at GE subdirectories containing images
Hls Þ to view the GE subdirectories containing 4 runs worth
of I.* files
åDirectories
are numbered in multiples of 20 (default naming system used by the GE scanner):
001/ 021/ 041/ 061/. . . 201/ 221/
HCommand line: Imon -start_dir 001 -GERT_Reco2 -quit
å-start_dir specifies the starting directory
where Imon will begin monitoring the images. In this example, our start directory is 001/
å-GERT_Reco2 will create a script called ÔGERT_Reco2Õ, similar to the one that program Ifile
creates (for more info on Ifile,
type Ifile -help).
íThe GERT_Reco2 script may be run to create the
AFNI datasets corresponding to the I.*
files
å-quit will terminate Imon, after all image files have been
examined,
íIf -quit is not used, the program will forever
wait for more images, until <ctrl-c>
is used to terminate the program
HFor a full list of Imon options, type Imon -help