-2-
¥Transformation proceeds in two stages:
1.Alignment of AC-PC and I-S axes (to +acpc coordinates)
2.Scaling to Talairach-Tournoux Atlas brain size (to +tlrc coordinates)
¥
¥Alignment to +acpc coordinates:
²Anterior commissure (AC) and posterior commissure (PC) are aligned to be the y-axis
²The longitudinal (inter-hemispheric or mid-sagittal) fissure is aligned to be the yz-plane, thus defining the z-axis
²The axis perpendicular to these is the x-axis (right-left)
²Five markers that you must place using the [Define Markers] control panel:
åAC superior edge  = top middle of anterior commissure
åAC posterior margin  = rear middle of anterior commissure
åPC inferior edge  = bottom middle of posterior commissure
åFirst mid-sag point  = some point in the mid-sagittal plane
åAnother mid-sag point = some other point in the mid-sagittal plane
²This procedure tries to follow the Atlas as precisely as possible
åEven at the cost of confusion to the user (e.g., you)