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Script for
Deconvolution - 2
#=================================================================
# volume register and time
shift our datasets, and remove the first
# two time points
#=================================================================
foreach run ( `count -digits
1 1 10` )
3dvolreg -verbose
\
-base
{$subj}_r{$run}+orig'[2]' \
-tshift 0
\
-prefix {$subj}_r{$run}_vr \
{$subj}_r{$run}+orig'[2..137]'
# will store run data in
runs_orig directory
#================================================================
# smooth data with
3dmerge.
#================================================================
3dmerge -1blur_rms 4
\
-doall
\
-prefix {$subj}_r{$run}_vr_bl \
{$subj}_r{$run}_vr+orig
end
End
of loop over imaging runs
Lightly blur each
dataset to
reduce noise and increase functional overlap between runs and subjects
Image registration of each run to its #2 sub-brick
Loop
over imaging runs 1..10