¥ type source
epi_r1_decon ; then wait for programs
to run
¥ type afni to view what weÕve got
H Switch Underlay to
epi_r1_reg (output from 3dvolreg)
H Switch Overlay to
epi_r1_func (output from 3dDeconvolve)
H Sagittal Image and Graph viewers
H FIM¨Ignore¨2 to have graph viewer not plot 1st 2 time pts
H FIM¨Pick
Ideal ; pick epi_r1_ideal.1D (output from waver)
¥ Define Overlay to set up functional coloring
¥ Olay¨Allstim[0] Coef (sets coloring to be from model fit b)
¥ Thr¨Allstim[0] t-s (sets threshold to be model fit t-statistic)
¥ See
Overlay (otherwise wonÕt see the
function!)
¥ Play with threshold slider to get a meaningful activation map
(e.g., t =4 is a decent threshold)