Ð44Ð
Removing Residual Motion Artifacts
¥ Last part of script epi_r1_decon:
¥
¥3dDeconvolve                         \
¥    -input epi_r1_reg+orig           \
¥    -nfirst     2                    \
¥    -num_stimts 7                    \
¥    -stim_file  1 epi_r1_ideal.1D    \
¥    -stim_label 1 AllStim            \
¥    -stim_file  2 epi_r1_mot.1D'[0]' \
¥    -stim_base  2                    \
¥    -stim_file  3 epi_r1_mot.1D'[1]' \
¥    -stim_base  3                    \
¥    -stim_file  4 epi_r1_mot.1D'[2]' \
¥    -stim_base  4                    \
¥    -stim_file  5 epi_r1_mot.1D'[3]' \
¥    -stim_base  5                    \
¥    -stim_file  6 epi_r1_mot.1D'[4]' \
¥    -stim_base  6                    \
¥    -stim_file  7 epi_r1_mot.1D'[5]' \
¥    -stim_base  7                    \
¥    -tout                            \
¥    -bucket epi_r1_func_mot          \
¥    -fitts  epi_r1_fitts_mot
¥
These new lines add 6 regressors to the model and assign them to the baseline (-stim_base option)
Output files: take a
moment to look at results