7/2/2004 SSCC/NIMH 55
Colorizing results with ScaleToMap:
¥This step is no longer necessary with SUMAÕs new interface for colorizing data.
¥In the old days, ScaleToMap was the only way for getting node-based results into SUMA
¥Execute: source run_ScaleToMap
¥ScaleToMap     -input   out_Del.1D.dset  0  6         \
              -cmap    afni_p20                \
                  -apr     30                      \
               -msk     -3.0 -0.1               \
               -nomsk_col                       \
               > out_Del.1D.col
H-input : Specify the 1D format input file and the columns containing the node index and the node data
H-cmap : Specify the colormap to use.
åHere we are using AFNIÕs standard colormaps (positive, 20 colors).
åCould use your own colormaps, see MakeColorMap
H-apr: AFNI positive range value.
åScaling a la AFNI, other scaling methods that do not require 0 ˆ range or Ðrange ˆrange are also available
åWhen data are integer valued (such as ROI datasets), you can use a direct mapping where a node with value i gets mapped to the ith color in the map.
H -msk: Mask data values in the specified range (inclusive)
H-nomsk_col: Do not color masked nodes (default is a dark gray).
åYou can specify your own mask color
HThe output of ScaleToMap is to stdout, which can be redirected with Ô > Ô symbol to a text file
¥