--- AFNI Start to Finish (Soup to Nuts) notes ---

# ----- page 2 -----
# go to the proper starting directory
cd AFNI_data4

# ----- page 7 -----
# create and view the processing script
nedit s1.afni_proc.block &
tcsh s1.afni_proc.block
nedit proc.sb23.blk &

# ----- page 8 -----
# execute the processing script, as shown in the output of afni_proc.py
tcsh -x proc.sb23.blk |& tee output.proc.sb23.blk

# ----- page 9 -----
# briefly review the original data
cd sb23
ls
afni &

# ------------------------------------------

# review data in sb23.blk.results directory,
# while following script prob.sb23.blk (keep "nedit proc.sb23.blk" open)

# ----- page 10 -----
cd sb23.blk.results
ls
afni &

# NOTE: most of the work will be done by opening a second afni controller
#       (via New), and changing underlays in one at a time.

# ----- page 13 -----
1dplot -sepscl outcount_r01.1D outcount_r08.1D